CX288522
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 4.354e-48 Identity = 94/182 (51.65%), Postives = 125/182 (68.68%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560 DEF+S + +PKILITT R +L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR HRYIF +++ G G + Sbjct: 130 DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2) HSP 1 Score: 190.66 bits (483), Expect = 4.354e-48 Identity = 94/182 (51.65%), Postives = 125/182 (68.68%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560 DEF+S + +PKILITT R +L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR HRYIF +++ G G + Sbjct: 130 DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 1.654e-47 Identity = 92/182 (50.55%), Postives = 126/182 (69.23%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560 DEF+S + +PKILITT R +L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR HRYIF++++ G G + Sbjct: 130 DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 1.654e-47 Identity = 92/182 (50.55%), Postives = 126/182 (69.23%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560 DEF+S + +PKILITT R +L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR HRYIF++++ G G + Sbjct: 130 DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.186e-45 Identity = 88/182 (48.35%), Postives = 121/182 (66.48%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560 DEF+ + PKILITT R F +L S+IPNS Y R LKKII +D+T ++V++ +R+ P+ L++ LPDGPTAHFK+S + LRK++K G PT H PE++LNNF TRLGH +GR+ SL+P P F GR+V TFHNQRD+IFFR+HRY+F++++ G G + Sbjct: 124 DEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRYLFKSEKKVGIQELGPR 305
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 7.685e-45 Identity = 88/182 (48.35%), Postives = 122/182 (67.03%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560 DEFS+ + PK+LITT R F +L +VIP+++ Y R LKK+I + FT ++V++ +R+ P+ +++ LPDGPTAHFK+S + LRK++K G NPT H PE++LNNF TRLGH +GRL +LFP P+F GR+V TFHNQRDFIFFR HRYIF+ ++ G G + Sbjct: 111 DEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVGIQELGPR 292
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4) HSP 1 Score: 178.333 bits (451), Expect = 2.236e-44 Identity = 83/175 (47.43%), Postives = 116/175 (66.29%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGS 542 DEF+ + +PK++IT F EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GPTA+FK++ L +D+K G T H PE++LNNF TRLGH + R++ LFP P+F GRRVVTFHNQRD+IFFRHHRY F+ + SK + Sbjct: 165 DEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAA 339
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.227e-42 Identity = 89/174 (51.15%), Postives = 120/174 (68.97%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESK 536 D+FSS ++ PK+LIT ++ F EL + PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS + L DIK +H T H PE++LNNF TRLG VGR++ +LF PEFRGRR VTFHNQRD+IFFRHHRY F TKE K Sbjct: 173 DDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEF-TKEGK 345
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: YDS4_SCHPO (Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe GN=SPAC4F8.04 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.700e-40 Identity = 82/174 (47.13%), Postives = 119/174 (68.39%), Query Frame = 3 Query: 18 DEFSSIL-KQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKES 533 DEFS+ ++ PK+L+TT + S + F SELL PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+P+ +GR+VVT H QRDF+FFR HRY F K + Sbjct: 81 DEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSN 254
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 4.825e-39 Identity = 78/163 (47.85%), Postives = 107/163 (65.64%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKG 539 PKI +TT F + L+ ++PN + KR Y LK+I + K++FT I++++ ++++ L I LP+GPT +FKLS V K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+P+ GR+V+T HNQRD+IFFR HRY+F+ E G Sbjct: 93 PKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERVG 255 The following BLAST results are available for this feature:
BLAST of CX288522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288522 ID=CX288522; Name=CX288522; organism=Citrus clementina; type=EST; length=566bpback to top |