CX288522

Overview
NameCX288522
Unique NameCX288522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11218 contig Ccv1_Contig11218:437..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.354e-48
Identity = 94/182 (51.65%), Postives = 125/182 (68.68%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560
            DEF+S   +  +PKILITT      R      +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR HRYIF +++  G    G +
Sbjct:  130 DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 4.354e-48
Identity = 94/182 (51.65%), Postives = 125/182 (68.68%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560
            DEF+S   +  +PKILITT      R      +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR HRYIF +++  G    G +
Sbjct:  130 DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.654e-47
Identity = 92/182 (50.55%), Postives = 126/182 (69.23%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560
            DEF+S   +  +PKILITT      R      +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR HRYIF++++  G    G +
Sbjct:  130 DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.654e-47
Identity = 92/182 (50.55%), Postives = 126/182 (69.23%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560
            DEF+S   +  +PKILITT      R      +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR HRYIF++++  G    G +
Sbjct:  130 DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.186e-45
Identity = 88/182 (48.35%), Postives = 121/182 (66.48%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560
            DEF+    +   PKILITT      R   F  +L S+IPNS  Y R    LKKII     +D+T ++V++ +R+ P+ L++  LPDGPTAHFK+S + LRK++K  G  PT H PE++LNNF TRLGH +GR+  SL+P  P F GR+V TFHNQRD+IFFR+HRY+F++++  G    G +
Sbjct:  124 DEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRYLFKSEKKVGIQELGPR 305          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.685e-45
Identity = 88/182 (48.35%), Postives = 122/182 (67.03%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 560
            DEFS+   +   PK+LITT      R   F  +L +VIP+++ Y R    LKK+I     + FT ++V++ +R+ P+ +++  LPDGPTAHFK+S + LRK++K  G NPT H PE++LNNF TRLGH +GRL  +LFP  P+F GR+V TFHNQRDFIFFR HRYIF+ ++  G    G +
Sbjct:  111 DEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVGIQELGPR 292          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4)

HSP 1 Score: 178.333 bits (451), Expect = 2.236e-44
Identity = 83/175 (47.43%), Postives = 116/175 (66.29%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGS 542
            DEF+    +  +PK++IT           F  EL   IPNS  + R    LK IIE AK+++FT ++VVH +R++P+ ++   LP+GPTA+FK++ L   +D+K  G  T H PE++LNNF TRLGH + R++  LFP  P+F GRRVVTFHNQRD+IFFRHHRY F+ + SK +
Sbjct:  165 DEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAA 339          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.227e-42
Identity = 89/174 (51.15%), Postives = 120/174 (68.97%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESK 536
            D+FSS  ++   PK+LIT      ++   F  EL  + PN+    R    +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS + L  DIK +H   T H PE++LNNF TRLG  VGR++ +LF   PEFRGRR VTFHNQRD+IFFRHHRY F TKE K
Sbjct:  173 DDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEF-TKEGK 345          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: YDS4_SCHPO (Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe GN=SPAC4F8.04 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.700e-40
Identity = 82/174 (47.13%), Postives = 119/174 (68.39%), Query Frame = 3
Query:   18 DEFSSIL-KQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKES 533
            DEFS+   ++   PK+L+TT +  S +   F SELL   PN+ + KR G  ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS L   K+I NHG  TGHIPEL++NNF+TRLG  V R  QSLF Q+P+ +GR+VVT H QRDF+FFR HRY F  K +
Sbjct:   81 DEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSN 254          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.825e-39
Identity = 78/163 (47.85%), Postives = 107/163 (65.64%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKG 539
            PKI +TT          F + L+ ++PN  + KR   Y LK+I +   K++FT I++++ ++++   L  I LP+GPT +FKLS  V  K I  HG PT HIPEL+LNNF TRLG  VGRL QS+ PQ+P+  GR+V+T HNQRD+IFFR HRY+F+  E  G
Sbjct:   93 PKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERVG 255          
The following BLAST results are available for this feature:
BLAST of CX288522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RPF1_PONAB4.354e-4851.65Ribosome production factor 1 OS=Pongo abelii GN=BX... [more]
RPF1_HUMAN4.354e-4851.65Ribosome production factor 1 OS=Homo sapiens GN=BX... [more]
RPF1_RAT1.654e-4750.55Ribosome production factor 1 OS=Rattus norvegicus ... [more]
RPF1_MOUSE1.654e-4750.55Ribosome production factor 1 OS=Mus musculus GN=Bx... [more]
RPF1_XENLA1.186e-4548.35Ribosome production factor 1 OS=Xenopus laevis GN=... [more]
RPF1_DANRE7.685e-4548.35Ribosome production factor 1 OS=Danio rerio GN=bxd... [more]
YUY1_CAEEL2.236e-4447.43Brix domain-containing protein F44G4.1 OS=Caenorha... [more]
RPF1_DROME1.227e-4251.15Probable ribosome production factor 1 OS=Drosophil... [more]
YDS4_SCHPO5.700e-4047.13Brix domain-containing protein C4F8.04 OS=Schizosa... [more]
RPF1_YEAST4.825e-3947.85Ribosome production factor 1 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionC02001D03SK IF1 Citrus clementina cDNA clone C02001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288522 ID=CX288522; Name=CX288522; organism=Citrus clementina; type=EST; length=566bp
TTGCGGGTAATGATGCTGATGAGTTTAGTTCTATTCTAAAGCAAGGATGC
GCCCCGAAGATATTGATCACTACATGTCGTTTCAATTCCAGTAGAGGACC
GGCCTTTATATCAGAGTTACTGTCTGTGATCCCAAATTCTCACTATTACA
AGAGAGGAACCTATGATTTGAAGAAGATTATAGAATATGCAAAGAAGAAG
GACTTCACTTCTATAATAGTTGTTCACACCAATAGGAGGGAACCAGATGC
TCTACTAATCATTGGCCTGCCTGATGGACCTACTGCCCATTTCAAGCTGT
CAAAGCTTGTTTTACGCAAGGATATTAAGAATCATGGAAATCCTACCGGT
CACATTCCGGAGCTAGTGTTGAATAACTTCGCAACACGCCTGGGTCATCG
TGTTGGGAGATTGATACAGTCACTTTTCCCTCAAAGTCCAGAATTCCGAG
GTCGTCGAGTGGTGACTTTTCACAATCAACGAGATTTCATATTCTTCCGA
CATCATCGGTATATATTTGAAACCAAAGAAAGTAAAGGGAGTGACGCAAA
TGGTAAGAAAGCGAAA
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