CX288529

Overview
NameCX288529
Unique NameCX288529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288529 vs. ExPASy Swiss-Prot
Match: Y1222_ARATH (Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.657e-54
Identity = 112/193 (58.03%), Postives = 134/193 (69.43%), Query Frame = 1
Query:   31 TSFSCYGAVSTLRTPIPLSRLSTFRSPSVSTIPNRFYKFRVKCSRAEAGVVDDSRSAPIDVVADVKSERXXXXXXXXXXXXAICKAAVSKGIEVISLSRSGRPTYSGSWVDQVTWKSGDVFYVNWDEVLTGATAVVSTIGGVGSEEQMLRINGEXXXXXXXXXKEYGVPKFILISVHDYNLPSFLLSSAYFTG 609
            TSF  + A+S      P    ++FR  S S    R +K  VKC+ AEAG+   S SAPID+VADVKSER            AICKAA+S GIEV+S+SRSGRP +  SW+DQVTW +GDVFY+NWDEVL GATAVVSTIGG G+EEQM RINGE         K++GVPKF+LI+VHDYNLP F+LS+ YFTG
Sbjct:    2 TSFLSFSAISAHP---PTFSGASFRPRSFSP---RLFKSCVKCTYAEAGLSSASWSAPIDIVADVKSERVVVLGGNGFVGSAICKAAISNGIEVVSVSRSGRPNFEDSWLDQVTWVTGDVFYLNWDEVLLGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITVHDYNLPPFILSNGYFTG 188          
The following BLAST results are available for this feature:
BLAST of CX288529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1222_ARATH3.657e-5458.03Uncharacterized protein At1g32220, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC02001D12SK IF1 Citrus clementina cDNA clone C02001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288529 ID=CX288529; Name=CX288529; organism=Citrus clementina; type=EST; length=611bp
ACTCCACAAAAACAAAAAAGAACAATGGCGACGTCGTTTTCGTGCTACGG
CGCCGTTTCCACGCTTCGCACTCCCATTCCACTCTCTAGACTTTCCACCT
TTCGTTCTCCGTCCGTCTCCACTATTCCGAACCGGTTCTACAAGTTTAGA
GTCAAGTGCAGCCGTGCGGAAGCAGGTGTAGTGGATGACTCTAGGTCTGC
TCCAATAGATGTTGTTGCAGATGTTAAGTCTGAGCGGGTTGTGGTCTTAG
GAGGCAGTGGTTTTGTTGGTTCTGCAATATGCAAGGCTGCAGTGTCCAAG
GGCATAGAGGTCATAAGCCTAAGCAGGTCAGGACGTCCTACTTACTCTGG
GTCATGGGTAGATCAAGTTACTTGGAAATCAGGAGATGTTTTCTATGTAA
ACTGGGATGAAGTACTTACTGGGGCCACTGCAGTAGTTTCTACCATTGGA
GGCGTTGGTAGTGAGGAACAGATGCTACGGATCAATGGTGAGGCTAATGT
TGTGGCAGTGAATGCTGCAAAGGAATATGGAGTTCCCAAGTTTATCTTGA
TCAGTGTGCATGATTACAATTTGCCATCATTTCTACTTTCATCCGCATAT
TTCACAGGAAA
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