CX288533

Overview
NameCX288533
Unique NameCX288533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288533 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 75/117 (64.10%), Postives = 82/117 (70.09%), Query Frame = 3
Query:    3 MVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 353
            MVNADLARIINSDEVQSVV PI+   KRA                  YAKTARRMSLLAEA+RV            PI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  292 MVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408          
BLAST of CX288533 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 3
Query:    3 MVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 353
            MVNADLARIINSDE+QSVV PIK + KRA                  YAKTA+RMSLLAEAQRV             +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  290 MVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406          
BLAST of CX288533 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.740e-31
Identity = 74/117 (63.25%), Postives = 79/117 (67.52%), Query Frame = 3
Query:    3 MVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 353
            MVNADLARIINSDEVQSVV PIK   KRA                  YAKTA+RMSLLAEA RV             +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  291 MVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407          
The following BLAST results are available for this feature:
BLAST of CX288533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RL4_PRUAR2.056e-3264.1060S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH5.981e-3261.5460S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH1.740e-3163.2560S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC02001E04SK IF1 Citrus clementina cDNA clone C02001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288533 ID=CX288533; Name=CX288533; organism=Citrus clementina; type=EST; length=667bp
AGATGGTCAACGCTGACTTGGCTAGGATTATTAACTCGGATGAGGTGCAG
TCTGTTGTCAGGCCGATTAAGACGGAGGTTAAGAGGGCTCCGATGAAGAA
GAATCCTCTCAAGAACTTGAATACTCTGTTGAGGTTGAACCCATATGCTA
AGACTGCTCGACGGATGTCACTTTTGGCTGAGGCACAACGGGTTAAAGCT
AAGAAGGAGAAGCTCGACAAGAAGAGGAAGCCCATCACTAAGGAGGAGGC
AGCTGCAATCAAGTCTGCCGGCAAGGCATGGTACCAGACTATGATCTCAG
ACAGTGATTATACCGAGTTCGAGAACTTCTCGAAGTGGCTTGGTGTTTCT
CAGTAATCTGATTGTTGGTTTTTAAATTTTGATTTTTGAGACAATATCTT
GTTAATCTTTGTGGATTTGCTGTTGAATTTTAGTATCTTTTGCTGTTTTG
AGTCATGGATGAGAATGTTTGGAAGGAAGATAAGCTGAATGGTCAATGTT
TTTCCTCCCAGCGTTTTTGTCTTTATGGGCAAGGTGAAAGAACTTTCTTT
GAAGTTAGAATTGGAGTTATATGTTTTAGGAGGTGGATTTATTGTCTTAA
TGGTACTATTTATACTTAAAAATTATAATGCTGCTCTTATCATTTGATTG
AAAAAAAAAAAAAAAAA
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