CX288536

Overview
NameCX288536
Unique NameCX288536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288536 vs. ExPASy Swiss-Prot
Match: Y1480_MYCS2 (Putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_1480 OS=Mycobacterium smegmatis GN=MSMEG_1480 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 3
Query:   66 SAVNAASLRFQETHRPEPLFVDPYAGCLVPP------------------DVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 482
            +A   A++R   T +P+PL  DPYA  LV                    D  +DL +      + T++ D+  +      DG++Q V+L  G+DTR YRL+WP  T++F++   ++ +     L  +GA+       + V L   +   ALR  GF+
Sbjct:   18 TATGVAAMRALATRQPDPLIDDPYADALVKAVGLEHCIALADGETCVEGDPMLDLNRMCEQIAVRTRYFDELFIAA--GADGVRQAVILASGLDTRAYRLDWPAGTVVFEVDQPQVIEFKTRTLADLGAQPTAERRTVAVDLR-DDWPAALRDAGFD 171          
BLAST of CX288536 vs. ExPASy Swiss-Prot
Match: Y4873_MYCA1 (Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4873 OS=Mycobacterium avium (strain 104) GN=MAV_4873 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 49/157 (31.21%), Postives = 74/157 (47.13%), Query Frame = 3
Query:   66 SAVNAASLRFQETHRPEPLFVDPYAGCLV--------------PPDVQMDLKKYSHHYC----LTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 482
            +A+  A+ R  E  +P+PL VDPYA                   PD Q+    +  H+       TK+ D+   R  +   G++QVV+L  G+D+R YRL+WP +T IF++   ++     E L GV A        + V L   +  QALR  GF+
Sbjct:   17 TALFVATARALEAQKPDPLAVDPYAEIFCRAVGGSAADVLDGKDPDHQLKTDDFGVHFVNFQGARTKYFDEYFRRAADA--GVRQVVILAAGLDSRAYRLDWPAATTIFELDQPQVLDFKREVLAGVDAHPRAERREIAVDLR-EDWPQALRDSGFD 170          
BLAST of CX288536 vs. ExPASy Swiss-Prot
Match: Y3777_MYCPA (Putative S-adenosyl-L-methionine-dependent methyltransferase MAP_3777 OS=Mycobacterium paratuberculosis GN=MAP_3777 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 3
Query:   66 SAVNAASLRFQETHRPEPLFVDPYAGCLV--------------PPDVQMDLKKYSHHYC----LTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 482
            +A+  A+ R  E  +P+PL VDPYA                   PD Q+    +  ++       T++ D+   RT +   G++QVV+L  G+D+R YRL+WP +T IF++   ++     E L   GA+       + + L   +  QALR  GF+
Sbjct:   17 TALFVATARALEAQKPDPLAVDPYAEIFCRAVGGTAADVLDGKDPDHQLKTTDFGENFVNFQGARTRYFDNYFARTADA--GVRQVVVLAAGLDSRAYRLDWPAATTIFELDQPQVLDFKREVLARAGAQPRAERREIAIDLR-EDWPQALRDSGFD 170          
BLAST of CX288536 vs. ExPASy Swiss-Prot
Match: Y3718_FRAAA (Putative S-adenosyl-L-methionine-dependent methyltransferase FRAAL3718 OS=Frankia alni (strain ACN14a) GN=FRAAL3718 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 3
Query:   66 SAVNAASLRFQETHRPEPLFVDPYA-----------GCLVPPDVQMDLKKYSHHYCLT----TKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERI--FKISAEKLEGVGAKIPR 410
            +AV  A +R  ET R +PLF DP A           G L PP      ++      L+    TKF+DD L R V    G++QVVLL  GMD+R +R++WPT T +F++       FK S  + E   A+  R
Sbjct:   16 TAVGVARVRAMETAREQPLFRDPLALAFATAGGRGPGTLSPPRADEAARRRWLEVALSIVIRTKFLDDLLNRAV--ASGVRQVVLLGAGMDSRAFRMDWPTGTRLFEVDTAEPLGFKASVLRQERAVARCER 145          
The following BLAST results are available for this feature:
BLAST of CX288536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1480_MYCS27.072e-1328.03Putative S-adenosyl-L-methionine-dependent methylt... [more]
Y4873_MYCA17.819e-1231.21Putative S-adenosyl-L-methionine-dependent methylt... [more]
Y3777_MYCPA5.068e-1129.30Putative S-adenosyl-L-methionine-dependent methylt... [more]
Y3718_FRAAA8.645e-1136.36Putative S-adenosyl-L-methionine-dependent methylt... [more]
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Properties
Property NameValue
Genbank descriptionC02001E07SK IF1 Citrus clementina cDNA clone C02001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288536 ID=CX288536; Name=CX288536; organism=Citrus clementina; type=EST; length=488bp
AGACTAAGAAACATGGGGTTCTGTTGAGAGCTAAACTGGACGGCGAAAAT
GACCCATTACTCCAGTCCGCTGTGAATGCAGCTTCGCTTCGTTTTCAGGA
GACCCATCGACCAGAGCCACTGTTTGTTGATCCTTATGCTGGTTGCTTGG
TTCCTCCTGATGTTCAAATGGATTTAAAGAAGTACTCACACCACTATTGT
CTCACAACTAAGTTCATTGATGATAAGTTACTTCGTACAGTGAATCACAT
GGATGGACTTAAGCAGGTTGTTTTGTTGACTGATGGCATGGACACTCGGC
CTTATAGGCTTAACTGGCCCACTTCGACCATAATATTTGATATTTCACCA
GAAAGGATCTTCAAAATATCAGCTGAAAAGCTTGAAGGTGTAGGGGCTAA
GATTCCAAGAAGCTGTTTATTTCTTCATGTTCCATTAGAATCATCAAATA
TTCAACAAGCTCTGCGTGCAAAGGGCTTTAATGGAAAT
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