CX288538

Overview
NameCX288538
Unique NameCX288538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288538 vs. ExPASy Swiss-Prot
Match: QUA1_ARATH (Glycosyltransferase QUASIMODO1 OS=Arabidopsis thaliana GN=QUA1 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.732e-61
Identity = 106/201 (52.74%), Postives = 148/201 (73.63%), Query Frame = 1
Query:    4 ITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEP----KLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQN 594
            + NA  P + VFH+VT+ +  GAMQ  F   ++KG+ +EV+ +E++++LN+SY P++KQL +A+ +  YF    +   +     K RNP+YLS+LNHLRFY+PE+YP+L +I+FLDDDVVVQKDLT L+ +D+ G VNGAVETC  +FHRY +Y+NFS+P+I  KF+P+AC WA+GMN FDL AWR+   T  YHYWQ  N
Sbjct:  269 VKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLN 469          
BLAST of CX288538 vs. ExPASy Swiss-Prot
Match: GLTR_ARATH (Uncharacterized glycosyltransferase At3g02350 OS=Arabidopsis thaliana GN=At3g02350 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.621e-59
Identity = 104/202 (51.49%), Postives = 146/202 (72.28%), Query Frame = 1
Query:    4 ITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDF-KGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEP----KLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQN 594
            + NA+ P + VFH+VT+ +   AM+ WF      +G+ +E++++E+F +LN+SYAP+++QL +A  +  YF    +   +     K +NP+YLS+LNHLRFY+PE+YP+L KI+FLDDDVVVQKD+T L+ ++L G VNGAVETC  +FHRY +YLNFS+P+I   F+P AC WAFGMN FDL AWR+   T +YHYWQ  N
Sbjct:  270 VMNAEEPWKHVFHVVTDRMNLAAMKVWFKMRPLDRGAHVEIKSVEDFKFLNSSYAPVLRQLESAKLQKFYFENQAENATKDSHNLKFKNPKYLSMLNHLRFYLPEMYPKLNKILFLDDDVVVQKDVTGLWKINLDGKVNGAVETCFGSFHRYGQYLNFSHPLIKENFNPSACAWAFGMNIFDLNAWRREKCTDQYHYWQNLN 471          
The following BLAST results are available for this feature:
BLAST of CX288538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
QUA1_ARATH1.732e-6152.74Glycosyltransferase QUASIMODO1 OS=Arabidopsis thal... [more]
GLTR_ARATH1.621e-5951.49Uncharacterized glycosyltransferase At3g02350 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC02001E09SK IF1 Citrus clementina cDNA clone C02001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288538 ID=CX288538; Name=CX288538; organism=Citrus clementina; type=EST; length=599bp
ACCATCACTAATGCCGATCATCCAAAACAGATGGTCTTCCACATTGTAAC
CAATGGGGTCACCTATGGAGCTATGCAGGCTTGGTTCCTCAATAATGACT
TTAAAGGGTCCACGATAGAAGTGCAGAATATAGAGGAGTTTTCATGGTTG
AATGCTTCTTATGCTCCCATTGTGAAACAGCTTCTTAATGCTGACTCACG
GGCTATCTATTTTGGTGAATATCAAGATTTGAGGGTTGAGCCGAAATTGC
GGAATCCTAGGTATCTGTCTTTGCTAAATCACCTTCGCTTTTACATCCCG
GAGATTTATCCGCAGTTGGAGAAAATAGTTTTTCTTGATGATGATGTTGT
TGTTCAGAAGGATTTGACACCACTTTTCTCATTGGATTTACATGGAAATG
TGAATGGCGCAGTTGAAACTTGTCTTGAAGCATTTCATCGTTATTACAAG
TATCTCAATTTCTCAAACCCAATTATTAGCTCGAAGTTTGATCCACAGGC
ATGTGGATGGGCATTTGGCATGAATGCTTTTGACTTGATTGCTTGGAGGA
AAGCAAATGTGACTGCACGGTATCATTACTGGCAAGAACAAAATGCTGA
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