CX288539

Overview
NameCX288539
Unique NameCX288539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288539_ssr129 microsatellite CX288539_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 1.467e-95
Identity = 167/201 (83.08%), Postives = 179/201 (89.05%), Query Frame = 1
Query:    4 RSKRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYK-NWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLR 603
            RSKRVLTP  DATSNW+WQ+AKAHV SNDAGVHQLVNHWLRTHAC+EPFILAAHRQLSAMHPI+KLLDPHMRYTLEINALARQ+LI+ADGVIE  FT G Y MEMSAAAYK +WRFD EGLPADLIRRGMA+PD TQPHGLKLLIEDYPYA DGLL+WSAI+ WV TYV  YYPN + I  D ELQSWY+ESIN GHADLR
Sbjct:  541 RSKRVLTPPVDATSNWMWQLAKAHVSSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLISADGVIEGGFTAGAYGMEMSAAAYKSSWRFDMEGLPADLIRRGMAIPDATQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLR 741          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 5.576e-95
Identity = 163/201 (81.09%), Postives = 181/201 (90.05%), Query Frame = 1
Query:    4 RSKRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKN-WRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLR 603
            +SKRV+TP  DATSNW+WQ+AKAHV SNDAGVHQLVNHWLRTHAC+EPFILAAHRQLSAMHPI+KLLDPHMRYTLEINA+ARQ LI+ADGVIESCFT G+Y +E+S+AAYKN WRFD EGLPADLIRRGMAVPDPTQPHGLKLL+EDYPYA DGLL+WSAI+ WV TYV  YY NS+ I  D ELQ+WY+ESIN GHAD R
Sbjct:  548 KSKRVVTPPVDATSNWMWQLAKAHVGSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINAVARQTLISADGVIESCFTAGQYGLEISSAAYKNKWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHR 748          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.421e-90
Identity = 155/201 (77.11%), Postives = 174/201 (86.57%), Query Frame = 1
Query:    4 RSKRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKN-WRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLR 603
            R+KRV TP ADATSNWLWQ+AKAHVCSNDAGVHQL+NHWLRTHAC+EPFI+AAHRQ+SAMHPI+KLL PHMRYTL+INALARQ LIN DGVIES FTPG  CMEMSA AY+  WR D+EGLPADLIRRGMAV DP+QPHGL+LLIEDYPYAADGLL+WSAI  W   YV+ YYP+   +  D ELQSWYAE++ +GHAD R
Sbjct:  522 RAKRVFTPPADATSNWLWQLAKAHVCSNDAGVHQLINHWLRTHACMEPFIIAAHRQMSAMHPIFKLLKPHMRYTLKINALARQILINGDGVIESGFTPGNVCMEMSAFAYRELWRLDQEGLPADLIRRGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKR 722          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 6.180e-86
Identity = 151/202 (74.75%), Postives = 169/202 (83.66%), Query Frame = 1
Query:    4 RSKRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKN-WRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRH 606
            R  +VLTP  DATSNWLW +AKAHV SNDAGVHQLVNHWLRTHA +EPFILAAHR +SAMHPI+KLL PHMRYTLEINALARQ+LINADGVIESCFTPG    E+SAA Y+N WRFD EGLP+DLIRRG+AV D TQPHG++LLIEDYPYA DGLL+WSAI  WV +YV  YYP++  +  D ELQ WY ESI+ GH DLRH
Sbjct:  536 RPSKVLTPPYDATSNWLWMLAKAHVSSNDAGVHQLVNHWLRTHATMEPFILAAHRHMSAMHPIFKLLHPHMRYTLEINALARQSLINADGVIESCFTPGPVSGEISAAYYRNHWRFDLEGLPSDLIRRGVAVEDATQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWYHESIHVGHGDLRH 737          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 6.848e-77
Identity = 133/204 (65.20%), Postives = 165/204 (80.88%), Query Frame = 1
Query:    1 ARSKRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKN-WRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            + +K V T   DAT++W+W++AKAHVCSNDAGVHQLVNHWLRTHA +EP+I+A +RQLS MHP+YKLL PHMRYTLEINA AR++LIN  G+IESCFTPG+Y ME+S+AAYK+ WRFD EGLPADL+RRGMA  D +   G++L+I+DYPYAADGLLIW AI+D V +YV H+Y +S  I  D ELQ+W+ E  N GH D + E
Sbjct:  537 SENKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHASMEPYIIATNRQLSTMHPVYKLLHPHMRYTLEINARARKSLINGGGIIESCFTPGKYAMELSSAAYKSMWRFDMEGLPADLVRRGMAEEDSSAECGVRLVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDE 740          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 6.410e-75
Identity = 124/201 (61.69%), Postives = 157/201 (78.11%), Query Frame = 1
Query:   10 KRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAY-KNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            K+V TP  DATS WLW +AK H  S+DAG HQL++HWLRTHAC EP+I+AA+RQLSAMHPIY+LL PH RYT+EINA ARQ+L+N  G+IE+CF PG+Y +E+S+A Y K WRFD+EGLPADLI+RG+A  D T  HG++L I DYP+A DGL++W AI++WV  YV HYYP+   I  D+ELQ W++E  N GH D + E
Sbjct:  519 KQVFTPGYDATSCWLWNLAKTHAISHDAGYHQLISHWLRTHACTEPYIIAANRQLSAMHPIYRLLHPHFRYTMEINARARQSLVNGGGIIETCFWPGKYALELSSAVYGKLWRFDQEGLPADLIKRGLAEEDKTAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDE 719          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 8.108e-70
Identity = 123/203 (60.59%), Postives = 153/203 (75.37%), Query Frame = 1
Query:   10 KRVLTPAADA--TSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAY-KNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            ++V TP  D   T +WLWQ+AKAH+ ++DAGVHQLV+HWLRTHAC EP+I+AA+RQLS MHP+Y+LL PH R+T+EINA AR  LINA G+IE  F PG Y +E+S+ AY + WRFD E LP DLIRRGMAV +P     L+L IEDYPYA DGLL+W AI+ W  TYV HYYP ++ I DD+ELQ+W+ E    GHAD + E
Sbjct:  550 RQVFTPGCDGSVTGSWLWQLAKAHILAHDAGVHQLVSHWLRTHACTEPYIIAANRQLSQMHPVYRLLHPHFRFTMEINAQARAMLINAGGIIEGSFVPGEYSLELSSVAYDQQWRFDMEALPEDLIRRGMAVRNPNGE--LELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDE 750          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.449e-68
Identity = 116/197 (58.88%), Postives = 151/197 (76.65%), Query Frame = 1
Query:   10 KRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAY-KNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHAD 597
            ++V TP+ D T +WLW++AKAHV ++DAG H+L+ HWLRTH  +EP+I+AA+RQLS MHPIY+LL PH RYT+ INALAR  LI+A G+IE  F+P +Y ME+S+ AY K WRFD E LPADL+RRGMA  DPT  HGL+L IEDYP+A DGLLIW AI+ WV  YV+ +YP++  +  D+ELQ+++ E    GH D
Sbjct:  563 RQVFTPSTDTTKSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLHPHFRYTMRINALARSRLISAAGIIELSFSPQKYSMELSSVAYDKLWRFDMEALPADLVRRGMAEEDPTAEHGLRLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGD 759          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 5.811e-68
Identity = 113/198 (57.07%), Postives = 148/198 (74.75%), Query Frame = 1
Query:   16 VLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            V+ PA +   + +W +AKAHV  ND+G HQLV+HWL THA +EPF +A +R LS +HPIYKLL PH R T+ IN LARQ+LINADG+IE  F PG+Y +EMS++ YKNW F  + LPADL++RG+A+ DP+ PHGL+L+IEDYPYA DGL IW AI+ WV  YVS YYP  + +  D ELQ+W+ E++  GH DL+ +
Sbjct:  492 VVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEK 689          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 5.811e-68
Identity = 117/197 (59.39%), Postives = 151/197 (76.65%), Query Frame = 1
Query:   10 KRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAY-KNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHAD 597
            ++V TP+ DAT +WLW++AKAHV ++DAG H+L+ HWLRTH  +EP+I+AA+RQLS MHPIY+LL PH RYT+ INA AR  LI+A G+IE  F+P +Y ME+S+ AY K WRFD E LPADL+RRGMA  DPT  HGLKL IEDYP+A DGLLIW AI+ WV  YV+ +YP++  +  D+ELQ+++ E    GH D
Sbjct:  546 RQVFTPSTDATMSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLRPHFRYTMRINARARSALISAGGIIERSFSPQKYSMELSSVAYDKLWRFDTEALPADLVRRGMAEEDPTAEHGLKLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGD 742          
The following BLAST results are available for this feature:
BLAST of CX288539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX3_ARATH1.467e-9583.08Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH5.576e-9581.09Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ1.421e-9077.11Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ6.180e-8674.75Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX6_ARATH6.848e-7765.20Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX2_ARATH6.410e-7561.69Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU8.108e-7060.59Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ4.449e-6858.88Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXX_SOYBN5.811e-6857.07Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXC1_ORYSJ5.811e-6859.39Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionC02001E10SK IF1 Citrus clementina cDNA clone C02001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288539 ID=CX288539; Name=CX288539; organism=Citrus clementina; type=EST; length=611bp
GCCCGATCAAAGCGCGTGCTCACACCTGCTGCCGACGCCACTTCCAATTG
GCTTTGGCAGATTGCCAAGGCCCATGTCTGCTCCAACGATGCCGGGGTGC
ACCAACTTGTTAACCATTGGTTACGTACGCATGCATGCATCGAGCCTTTT
ATTCTAGCAGCACATAGACAATTGAGTGCAATGCACCCAATTTACAAGCT
TTTGGATCCACATATGAGATACACATTGGAGATTAATGCTCTAGCTAGGC
AAAATTTAATCAATGCCGATGGTGTGATCGAGTCTTGCTTCACTCCTGGC
CGCTACTGCATGGAAATGAGCGCCGCCGCGTACAAAAATTGGCGGTTTGA
CAAGGAAGGCCTCCCCGCAGATCTCATCCGCAGAGGCATGGCAGTACCTG
ACCCAACACAGCCACATGGTTTGAAGTTGCTAATTGAGGACTACCCATAC
GCAGCAGACGGACTTCTAATTTGGTCAGCAATTGAGGATTGGGTGTGCAC
TTATGTGAGCCATTACTACCCAAATTCAAGCCAAATTTGTGACGACAAAG
AGCTACAATCATGGTACGCTGAGTCCATCAACACAGGCCATGCCGATCTT
CGCCACGAAAG
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