CX288540

Overview
NameCX288540
Unique NameCX288540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288540 vs. ExPASy Swiss-Prot
Match: ERV14_YEAST (ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae GN=ERV14 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 2
Query:    2 DLESDDINPFEASSRINFWVEPEFXXXXXXXXXXXVTGHWIMFLLGVPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIAKLAMA 304
            DLE+D INP E  S++N  + PE            + G+W +FLL +P++ Y++N    +  L+D TE+FR L   K+    KLGF+++ F   + ++ MA
Sbjct:   29 DLEADYINPIELCSKVNKLITPEAALHGALSLLFLLNGYWFVFLLNLPVLAYNLNKIYNKVQLLDATEIFRTLGKHKRESFLKLGFHLLMFFFYLYRMIMA 129          
BLAST of CX288540 vs. ExPASy Swiss-Prot
Match: ERV14_SCHPO (ER-derived vesicles protein erv14 OS=Schizosaccharomyces pombe GN=erv14 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 2
Query:    2 DLESDDINPFEASSRINFWVEPEFXXXXXXXXXXXVTGHWIMFLLGVPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIAKLAMA 304
            DLE D INP +  +++N  V PE            +   W++FL  +PL+ +H N  + + H++D TE+FR L   K+    K+ FY+I F  ++  + M+
Sbjct:   32 DLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLANLPLLVFHANQVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIMFFTLLYCMVMS 132          
BLAST of CX288540 vs. ExPASy Swiss-Prot
Match: ERV15_YEAST (ER-derived vesicles protein ERV15 OS=Saccharomyces cerevisiae GN=ERV15 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 2
Query:    2 DLESDDINPFEASSRINFWVEPEFXXXXXXXXXXXVTGHWIMFLLGVPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIAKLAMAGFE 313
            DLE+D IN  E   R+N    PE              G+W +FLL VP++ Y+ +   K+ HL+D T++FR L   K     KLGFY++ F     ++  A  E
Sbjct:   32 DLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYNASKVYKKTHLLDATDIFRKLGRCKIECFLKLGFYLLIFFFYFYRMVTALLE 135          
The following BLAST results are available for this feature:
BLAST of CX288540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ERV14_YEAST1.868e-1334.65ER-derived vesicles protein ERV14 OS=Saccharomyces... [more]
ERV14_SCHPO3.895e-1131.68ER-derived vesicles protein erv14 OS=Schizosacchar... [more]
ERV15_YEAST6.644e-1134.62ER-derived vesicles protein ERV15 OS=Saccharomyces... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02001E11SK IF1 Citrus clementina cDNA clone C02001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288540 ID=CX288540; Name=CX288540; organism=Citrus clementina; type=EST; length=620bp
GGACTTGGAGTCTGATGATATAAATCCTTTTGAAGCGTCATCTCGCATCA
ATTTTTGGGTTGAGCCTGAGTTTCTTCTGCAAGGATTGTTCTGCATTCTG
CTTCTTGTGACAGGCCACTGGATCATGTTTCTTCTTGGTGTACCTCTTGT
GTGCTACCATGTGAATCTGTATATGAAGCGGAAGCATCTTATTGATGTAA
CTGAAGTTTTCAGAAACCTCAAGGTTGAGAAGAAGTTTCGACTTGCCAAG
CTGGGTTTCTATGTGATTTTCTTCGCTCTGGTCATAGCCAAGCTTGCAAT
GGCAGGTTTTGAAGCTTTAGCTGGCAAGGATGAAAACCCACTTTCATTCT
AATCCCCACTGCTTTGAACAGTGTGGTATCTAGGCTTCTAAGCCAAGTCT
TCCATACTTCTGATCCATGTAAACAACAAACCTTCTCTCACACAAATAGA
TTTGTCAGTACTCAGGAAGTTAAAATGAGTTTTACTGCACTGTTTCTCTG
ATTGGGTGTCCTTGGCTATTCCTGGGAACCAAAATGTTCACATCGGTACA
TAGATTTGTAGACTGGTTAATGAAATGACATATGTCATTCGCCATTTTAT
GTCATCTTTCCACTCATTAT
back to top