CX288541

Overview
NameCX288541
Unique NameCX288541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig248 contig Ccv1_Contig248:40..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ1_ARATH (Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.860e-69
Identity = 131/177 (74.01%), Postives = 147/177 (83.05%), Query Frame = 3
Query:  111 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 641
            M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  LE N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EA              +DGGI+LETDANVIAGK   +S D  APLSEQTISQALATAREHLTRSL+K
Sbjct:    1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIFLSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ2_ORYSJ (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.304e-65
Identity = 125/178 (70.22%), Postives = 148/178 (83.15%), Query Frame = 3
Query:  108 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 641
            S ++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+ A              VDGGIILETDAN IAGKVA+++VD  AP SEQTISQALATAREHL RSLLK
Sbjct:    5 SKESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCIDEIVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 182          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ2_ARATH (Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 8.756e-65
Identity = 125/177 (70.62%), Postives = 142/177 (80.23%), Query Frame = 3
Query:  108 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 638
            S D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+ N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K EA              VD G++LETD NVIAGKVA  S +    LSEQT++QALATAREHL RSLL
Sbjct:    2 SPDSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ3_ARATH (Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 9.681e-64
Identity = 122/175 (69.71%), Postives = 141/175 (80.57%), Query Frame = 3
Query:  114 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 638
            D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EA              VD G++LETDANVIAGKVA  S +    LSEQT++QALATAREHL RSLL
Sbjct:    6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFLCLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ1_ORYSJ (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.308e-60
Identity = 115/176 (65.34%), Postives = 140/176 (79.55%), Query Frame = 3
Query:  111 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 638
            M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK  A  EAEI M +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+ A              VDGGI+LET+ +VIA KV++H ++    L+EQTI QAL TAREHLT+SLL
Sbjct:    1 MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTIVQALTTAREHLTKSLL 176          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ3_ORYSJ (Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.703e-56
Identity = 106/175 (60.57%), Postives = 133/175 (76.00%), Query Frame = 3
Query:  111 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSL 635
            M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M +   +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+  LLR  V ++ A              VDGGI+LETDA  I  KV+ H ++    L+EQ +S ALATAREH  RS+
Sbjct:    1 MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDEVVDGGIVLETDAKAILEKVSGHGLEGSGSLTEQKLSSALATAREHFARSI 175          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ1_BOVIN (Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.849e-31
Identity = 74/172 (43.02%), Postives = 108/172 (62.79%), Query Frame = 3
Query:  126 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 641
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+                VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ1_PONAB (Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 73/172 (42.44%), Postives = 107/172 (62.21%), Query Frame = 3
Query:  126 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 641
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+                VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ1_MOUSE (Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 73/172 (42.44%), Postives = 107/172 (62.21%), Query Frame = 3
Query:  126 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 641
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+                VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177          
BLAST of CX288541 vs. ExPASy Swiss-Prot
Match: COPZ1_HUMAN (Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 73/172 (42.44%), Postives = 107/172 (62.21%), Query Frame = 3
Query:  126 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 641
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+                VDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177          
The following BLAST results are available for this feature:
BLAST of CX288541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
COPZ1_ARATH5.860e-6974.01Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN... [more]
COPZ2_ORYSJ2.304e-6570.22Coatomer subunit zeta-2 OS=Oryza sativa subsp. jap... [more]
COPZ2_ARATH8.756e-6570.62Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN... [more]
COPZ3_ARATH9.681e-6469.71Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN... [more]
COPZ1_ORYSJ1.308e-6065.34Coatomer subunit zeta-1 OS=Oryza sativa subsp. jap... [more]
COPZ3_ORYSJ9.703e-5660.57Coatomer subunit zeta-3 OS=Oryza sativa subsp. jap... [more]
COPZ1_BOVIN4.849e-3143.02Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=... [more]
COPZ1_PONAB1.843e-3042.44Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 P... [more]
COPZ1_MOUSE1.843e-3042.44Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 P... [more]
COPZ1_HUMAN1.843e-3042.44Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02001E12SK IF1 Citrus clementina cDNA clone C02001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288541 ID=CX288541; Name=CX288541; organism=Citrus clementina; type=EST; length=647bp
GCAAACGTCCATTACGTTCTTCTCTGTATTGTAATCTTCCTTGACTCTCG
GGAGTCTCAACGCTCGAAATTAATTGACTGCAGACGACCAAGTTTAATCG
AACAACAAGCATGGATACTTGTCCGTCCATAAAGAATATCCTTCTCCTGG
ATTCTGAAGGGAAACGTGTAGCAGTCAAGTATTATTCAAATGACTGGCCA
ACCAACAGTGCAAAGGAAGCTTTTGAGAAAGCTGTGTTTACCAAGACCCA
GAAAACAAATGCACGGACCGAAGCGGAGATAGCTATGCTTGAGGGCAACG
TTATTGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTCACTGGGGGT
GAAGATGAAAATGAGCTGATCTTAGCCACAGTTCTTCAGGGATTTTTTGA
TGCAGTTGGTCTTCTTCTTAGAGGCAATGTGGACAAGAAGGAGGCTCTTG
AGAACTTGGATCTTATCTTGTTGTGCCTTGATGAAATTGTTGATGGAGGT
ATCATTCTGGAAACTGATGCAAATGTCATTGCTGGAAAGGTTGCAAGCCA
TAGTGTGGATGTCGGAGCTCCTTTGTCTGAGCAGACAATTAGTCAAGCAT
TGGCTACTGCCCGTGAACATTTAACAAGATCCCTTCTTAAGTGATGA
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