CX288544

Overview
NameCX288544
Unique NameCX288544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.057e-61
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  295 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.076e-61
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNV IEELPANVADLL
Sbjct:  296 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 3.076e-61
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNVVIEELPANVADLL
Sbjct:  296 LTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.017e-61
Identity = 116/119 (97.48%), Postives = 119/119 (100.00%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV+EELP+NVADLL
Sbjct:  294 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.948e-61
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN VT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  295 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.948e-61
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERML DIQKFYNVVIEELPANVADLL
Sbjct:  295 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.526e-60
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMR+RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT DDERMLFDIQKFYNV+IEELP+NVADLL
Sbjct:  295 LTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.993e-60
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY HRIGRSGRFGRKGVAINFVTR+DERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  296 LTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADLL 414
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.993e-60
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 355
            LTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELPANVADL
Sbjct:  136 LTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 253
[Close]
BLAST of CX288544 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.604e-60
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 2 
Query:    2 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 358
            LTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG SGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  295 LTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
The following BLAST results are available for this feature:
BLAST of CX288544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF414_TOBAC1.057e-6199.16Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF4A3_ORYSJ3.076e-6198.32Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A1_ORYSJ3.076e-6198.32Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A1_ARATH4.017e-6197.48Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A2_NICPL8.948e-6198.32Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF410_TOBAC8.948e-6198.32Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
IF4A8_TOBAC1.526e-6096.64Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A_WHEAT1.993e-6097.48Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A6_TOBAC1.993e-6097.46Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
IF411_TOBAC2.604e-6096.64Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionC02001F03SK IF1 Citrus clementina cDNA clone C02001F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288544 ID=CX288544; Name=CX288544; organism=Citrus clementina; type=EST; length=614bp
GCTGACAGATAAGATGCGTAGTCGTGATCATACCGTGTCTGCCACCCACG
GTGACATGGACCAAAACACTAGGGACATCATCATGCGTGAATTCCGGTCT
GGTTCGTCTCGTGTGCTTATCACTACTGATCTCTTGGCACGTGGTATTGA
TGTCCAGCAAGTGTCCCTGGTCATAAATTATGATCTTCCTACACAGCCAG
AAAACTACCTGCATCGTATAGGTCGTAGTGGACGATTTGGAAGAAAGGGT
GTTGCCATTAATTTCGTGACCAGGGATGATGAAAGGATGCTGTTTGATAT
TCAAAAGTTTTACAATGTCGTAATTGAAGAGCTGCCAGCAAATGTTGCTG
ATCTCCTGTGATGTGTTTTTGGATTGGTAAGGTGTTTTTGAAGTTTGAAG
TCTAGTCATTATGGTGGGTCTGGAGTGGTTGCTAAAAGAACCCTACAATT
ATGGCATTTGGAATGGCCTTTGTTTAAGTTTATGTTGCATCTGTTGTAGG
TTTGCATTAAATTATGTTGTTCTACACTTTTTTTTTAATTGTTGTGCGAC
ATTATGTAGAGTTGGAGCATGGCTAGTTTATTTGTCTTAAGAAAACTCGA
CTTGCTTGCTTATT
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