CX288553

Overview
NameCX288553
Unique NameCX288553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12284 contig Ccv1_Contig12284:610..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 420.239 bits (1079), Expect = 4.296e-117
Identity = 201/212 (94.81%), Postives = 206/212 (97.17%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP +AV+MVDENTICVAAILGSTLNGEFEDVKLLNDLL EKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWV+WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG EGYRNVMENC EN +VL+EGLEK
Sbjct:  149 GKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK 360          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 9.570e-117
Identity = 200/212 (94.34%), Postives = 206/212 (97.17%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP KAVEMVDENTICVAAILGSTLNGEFEDVK LNDLL EKNKETGWDTPIHVDAASGGFIAPF+YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNK+DLP+ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG+EGY+NVMENC ENA VL+EGLEK
Sbjct:  149 GKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKDDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEK 360          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 2.206e-113
Identity = 194/212 (91.51%), Postives = 203/212 (95.75%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP+DKPNIVTGANVQVCWEKFARYFEVELKEV LSEGYYVMDP KA EMVDENTICVAAILGSTLNGEFEDVK LNDLL +KN+ETGW+TPIHVDAASGGFIAPF+YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWR  EDLPEELIFHINYLGADQPTFTLNFSKGSSQ+IAQYYQLIRLGFEGY+NVMENC EN +VLKEG+EK
Sbjct:  148 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEK 359          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 9.269e-112
Identity = 188/212 (88.68%), Postives = 204/212 (96.23%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL EGYYVMDPAKAVE+VDENTICVAAILGSTL GEFEDVKLLN+LLT+KNKETGW+TPIHVDAASGGFIAPFL+P+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR+KEDLP+EL+FHINYLG+DQPTFTLNFSKGS Q+IAQYYQLIRLGFEGY+NVM+NC  NA VL EG+ K
Sbjct:  150 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWETPIHVDAASGGFIAPFLWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITK 361          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.713e-65
Identity = 115/212 (54.25%), Postives = 153/212 (72.17%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKPFDKPNIVTG  VQ+CW KFA YF++EL+EV +    Y+M P +A++  DENTI V   LG T   ++EDVK +++ L +  KETG D PIHVDAASGGF+APFL PE+ WDFRLP VKSIN SGHK+GL   G+GWVVWR K D+ ++L+F +NYLG + PTF+LNFS+   Q++ QYY  +R G  GY  V + C ++ + + + ++K
Sbjct:  147 GKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKK 357          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 5.157e-62
Identity = 109/207 (52.66%), Postives = 148/207 (71.50%), Query Frame = 1
Query:   16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            KPN+V  +  QVCWEKF  Y+++E++EV +   +  ++  K ++ VDE TI V  I+G T  G ++D+K L++L+ E NK+T +   IHVDAASGG  APF+ PELEWDFRL  V SIN SGHKYGLVY G+GWV+WR+K+ LPEELIF ++YLG + PT  +NFS  +SQ+I QYY  +R GF+GY+ + E  H+ AM L E +EK
Sbjct:  154 KPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHKYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEK 360          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.501e-61
Identity = 109/212 (51.42%), Postives = 152/212 (71.70%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            G P+DKPNIVTG  VQ+CW KFA YF++E++E+ +  G YVM+  + ++ VDENTI V   LG T   ++EDV  +++ L +  KE+G + PIHVDAASGGF+APF+  E+ WDFRLP VKSIN SGHK+GL   G+GWVVWR K+DL ++L+F++NYLG +  TF+LNFS+   Q+IAQYY  +R G  GY  + + C +  + + + L+K
Sbjct:  145 GLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDKFEKESGINIPIHVDAASGGFVAPFIQQEIIWDFRLPRVKSINASGHKFGLSPLGVGWVVWREKKDLHKDLVFNVNYLGGNMSTFSLNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKK 355          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.501e-61
Identity = 108/207 (52.17%), Postives = 149/207 (71.98%), Query Frame = 1
Query:   16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            KPN+V  +  QVCWEKF  Y+++E++EV + + +  ++  K ++ VDE TI V  I+G T  G ++D+K L++L+ E NK+T +   IHVDAASGG  APF+ PELEWDFRL  V SIN SGHKYGLVY G+GWV+WR+K+ LPEELIF ++YLG + PT  +NFS  +SQ+I QYY  +R GF+GY+ + E  H+ AM L + +EK
Sbjct:  154 KPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHKYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEK 360          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60
Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K
Sbjct:  149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60
Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K
Sbjct:  149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359          
The following BLAST results are available for this feature:
BLAST of CX288553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
DCE1_ARATH4.296e-11794.81Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_PETHY9.570e-11794.34Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH2.206e-11391.51Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC9.269e-11288.68Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
GADA_DICDI1.713e-6554.25Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCE_LACLM5.157e-6252.66Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
GADB_DICDI1.501e-6151.42Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCE_LACLA1.501e-6152.17Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEB_SHIFL8.234e-6050.94Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI8.234e-6050.94Glutamate decarboxylase beta OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC02001F12SK IF1 Citrus clementina cDNA clone C02001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288553 ID=CX288553; Name=CX288553; organism=Citrus clementina; type=EST; length=638bp
GGAAAGCCCTTTGACAAACCCAACATTGTCACTGGAGCGAACGTTCAGGT
CTGCTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTGAAGGAAGTGA
AGCTGTCGGAAGGCTACTACGTGATGGACCCAGCCAAAGCTGTAGAAATG
GTGGATGAAAACACTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTCAA
TGGAGAATTTGAAGATGTCAAGCTCTTGAACGACCTTTTGACAGAGAAGA
ACAAGGAAACAGGATGGGATACTCCAATTCATGTTGATGCTGCTAGTGGT
GGCTTCATTGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTT
GCCGCTGGTGAAGAGTATTAATGTTAGTGGCCACAAGTACGGGCTTGTGT
ATGCTGGTATTGGTTGGGTTGTTTGGAGAAACAAAGAAGACTTGCCTGAA
GAACTCATCTTCCACATCAATTACCTAGGAGCTGATCAACCCACCTTCAC
CCTCAATTTTTCTAAAGGTTCTAGCCAAGTAATTGCTCAGTACTACCAAC
TAATCCGCTTAGGTTTTGAGGGATACCGCAATGTGATGGAGAATTGTCAC
GAAAATGCAATGGTGCTGAAAGAAGGACTAGAGAAAAC
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