CX288556

Overview
NameCX288556
Unique NameCX288556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9642 contig Ccv1_Contig9642:19..563. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y464_SYNE7 (UPF0133 protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG M+ L +  KKAQ V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   A+  GAE LS LV  A KDA+QKS  AMKE+M  L
Sbjct:   10 LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPEALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEAL 104          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y1054_SYNP6 (UPF0133 protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG M+ L +  KKAQ V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   A+  GAE LS LV  A KDA+QKS  AMKE+M  L
Sbjct:   10 LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPEALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEAL 104          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y5067_ANASP (UPF0133 protein alr5067 OS=Anabaena sp. (strain PCC 7120) GN=alr5067 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.000e-16
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG M+ L E  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+  GA+ LS LVT A KDA+ KS   M+ERM DL
Sbjct:   12 LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPDALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDL 106          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y2322_ANAVT (UPF0133 protein Ava_2322 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_2322 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.164e-15
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG M+ L E  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+  GA+ LS LVT A KDA+ KS   M+ERM DL
Sbjct:   12 LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEILGEAGGGLVKVIVSGNQEPKRVEISPDALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDL 106          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y2554_CYAP8 (UPF0133 protein PCC8801_2554 OS=Cyanothece sp. (strain PCC 8801) GN=PCC8801_2554 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG ++ L E   KAQ V Q  A ++Q+EL   E +G+ EG+L+KV +SGNQ+P    I   A+E GA++LS LVT+A KDA+ +S   M+ +M +L
Sbjct:   11 LGKIKELQEAFAKAQQV-QAGAQQLQQELEQMEIEGFSEGKLVKVIMSGNQEPRSVTILPEALEKGADELSQLVTDAMKDAYTQSTETMRTKMEEL 105          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y448_NOSP7 (UPF0133 protein Npun_F0448 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F0448 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG M+ L +  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+  GAE LS LVT A K+A+ KS   M+ERM +L
Sbjct:   12 LGKMKELADAFKKAQQV-QEGAKRLQEELEQMEILGESGGGLVKVIVSGNQEPKRVEISPDALAEGAEVLSDLVTVAMKEAYNKSTATMRERMEEL 106          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y899_CYAP4 (UPF0133 protein Cyan7425_0899 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=Cyan7425_0899 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG M+ L   ++KAQ V Q  A ++Q++L   E +G   G L+KV +SGNQ+P R EI+   M  GAE ++ LVT A KDA+ KS   M+ERM +L
Sbjct:   11 LGKMKELAAAIQKAQQV-QEGAKKLQEDLEKMEIEGVAAGGLVKVIMSGNQEPRRVEISPDLMSEGAEVVADLVTAAMKDAYLKSTTTMRERMEEL 105          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y723_THEEB (UPF0133 protein tlr0723 OS=Thermosynechococcus elongatus (strain BP-1) GN=tlr0723 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG M+ L   ++KAQ V Q  A ++Q++L   + +G   G  +KV +SG Q+P R EI+   +  GAE LS LVT A +DA+QKS   M+ERM +L
Sbjct:   11 LGKMKELAAAIQKAQQV-QEGAKKLQEDLERMDIEGQAAGGAVKVIMSGTQEPRRVEISPDLLSEGAEVLSDLVTAAMRDAYQKSTATMRERMEEL 105          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y2224_CYAP7 (UPF0133 protein PCC7424_2224 OS=Cyanothece sp. (strain PCC 7424) GN=PCC7424_2224 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            LG ++ L E  +KAQ V Q  A ++Q EL     +G+     + V +SGNQ+P    I   A+E GAE+LS LVTEA KDA+ KS   M+++M +L
Sbjct:   11 LGKIKELQEAFQKAQQV-QEGAKQLQDELEQMSIEGHSSDGSVTVVMSGNQEPRSVTIQPTALEKGAEELSTLVTEAMKDAYSKSTDTMRQKMEEL 105          
BLAST of CX288556 vs. ExPASy Swiss-Prot
Match: Y020_PROM4 (UPF0133 protein P9211_00201 OS=Prochlorococcus marinus (strain MIT 9211) GN=P9211_00201 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  256 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 543
            L N   L E  KKAQ + Q +A ++Q+EL A E +G  +   + + LSGNQ P+R EI  + +  G EK  + + EA KDAH+ S   MKERM +L
Sbjct:    6 LPNFGQLTEAFKKAQQIQQ-DAQKLQEELDAMELEGKNQDGRVSICLSGNQLPLRIEIDPSILLEGKEKAEIAILEALKDAHELSTSTMKERMQEL 100          
The following BLAST results are available for this feature:
BLAST of CX288556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
Y464_SYNE71.796e-1651.04UPF0133 protein Synpcc7942_0464 OS=Synechococcus e... [more]
Y1054_SYNP61.796e-1651.04UPF0133 protein syc1054_d OS=Synechococcus sp. (st... [more]
Y5067_ANASP4.000e-1652.08UPF0133 protein alr5067 OS=Anabaena sp. (strain PC... [more]
Y2322_ANAVT1.164e-1552.08UPF0133 protein Ava_2322 OS=Anabaena variabilis (s... [more]
Y2554_CYAP87.544e-1544.79UPF0133 protein PCC8801_2554 OS=Cyanothece sp. (st... [more]
Y448_NOSP79.853e-1550.00UPF0133 protein Npun_F0448 OS=Nostoc punctiforme (... [more]
Y899_CYAP42.867e-1445.83UPF0133 protein Cyan7425_0899 OS=Cyanothece sp. (s... [more]
Y723_THEEB1.858e-1343.75UPF0133 protein tlr0723 OS=Thermosynechococcus elo... [more]
Y2224_CYAP71.204e-1242.71UPF0133 protein PCC7424_2224 OS=Cyanothece sp. (st... [more]
Y020_PROM41.204e-1242.71UPF0133 protein P9211_00201 OS=Prochlorococcus mar... [more]

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Properties
Property NameValue
Genbank descriptionC02001G03SK IF1 Citrus clementina cDNA clone C02001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288556 ID=CX288556; Name=CX288556; organism=Citrus clementina; type=EST; length=545bp
TTCGTGTTCTCAATGGCTTCGACAAGTGCCTTTACAGCTCAGATTTCAAG
TATTCACTGGAAGAAGCCCATTTCTTCTTCAAATTTTTCCAATAACCTAA
ATTTAAATTCAAACCTTGCTGGTAAGGAGATGTTATCATTTTCCAGTCAA
CAAAAATCAGGGCATCAATTTAGATCTCTCCGCGTGTGTGGTCTCTTTGG
AGGGAAGAAAGATAATAATGAGAAAGGTGATGATGCTCCTTCAAAGGCAG
GAATTCTTGGAAATATGCAGAATCTATATGAGACTGTGAAAAAGGCACAA
ATGGTGGTTCAAGTTGAGGCAGTGCGGGTGCAAAAAGAACTGGCTGCAGC
TGAGTTTGATGGTTATTGTGAGGGTGAGCTGATTAAGGTAACATTATCTG
GAAACCAGCAACCAGTACGCACTGAGATCACAGAGGCGGCAATGGAATTA
GGTGCAGAAAAACTTTCACTCTTAGTTACTGAGGCATACAAGGATGCACA
CCAGAAGAGTGTACTGGCCATGAAGGAGAGAATGAGTGATCTTGC
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