CX288559

Overview
NameCX288559
Unique NameCX288559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6838 contig Ccv1_Contig6838:165..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT1_DICDI (Nitrilase homolog 1 OS=Dictyostelium discoideum GN=nit1-1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.362e-39
Identity = 91/191 (47.64%), Postives = 123/191 (64.40%), Query Frame = 1
Query:   34 RVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYV--GDKDGDSLKVAETLD--GPIMQGYCSLARESSMWLSLGGFQEKGSDDAH--LCNTHVLVDDAGNIRSTYRKMHLFDVDIPG-GRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            R+ + Q+TS N+   NF     ++++A      L CLPE F+++  G    +S   AE LD  G I++ Y  LA+++++WLSLGGF EK  DD +  + NTH+++D  G I   YRKMHLFDVDIP  G    ES   + G D+V  DSPVG+LG ++CYDLRFPELY  LR + +AQ+LLVPSAF K TG
Sbjct:   14 RIGLGQITSTNNKEDNFRKCKEMIEKAVENKVNLFCLPECFAFISGGIHQFESRDNAEYLDQKGGIIERYKDLAKQNNIWLSLGGFHEKILDDPNDMIYNTHLIIDSNGVIVCEYRKMHLFDVDIPSKGVKMNESKVVKGGNDLVVCDSPVGKLGLSICYDLRFPELYLSLR-RMDAQILLVPSAFMKSTG 203          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NFT1_CAEEL (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Caenorhabditis elegans GN=nft-1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.409e-36
Identity = 81/185 (43.78%), Postives = 117/185 (63.24%), Query Frame = 1
Query:   37 VAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKG-SDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIV-AVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            +AV QMTS NDL  NF  +  +++ A     +++ LPE F ++G    + + +A   D   M+ Y  LAR+ ++WLSLGG   K  SD AH  NTH+++D  G  R+ Y K+HLFD++IPG     ES F++AG +++  VD+P+GRLG ++CYD+RFPEL    R +  AQ+L  PSAFT  TG
Sbjct:   17 IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNR-KRGAQLLSFPSAFTLNTG 200          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT1_HUMAN (Nitrilase homolog 1 OS=Homo sapiens GN=NIT1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 6.994e-36
Identity = 84/187 (44.92%), Postives = 114/187 (60.96%), Query Frame = 1
Query:   37 VAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSD---DAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVA-VDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            VAV Q+TS  D   NF T + LV+EAA  GA L  LPE F ++     ++L ++E L G +++ Y  LARE  +WLSLGGF E+G D      + N HVL++  G + +TYRK HL DV+IPG     ES+ T  G  + + V +P G++G  VCYD+RFPEL   L  Q  A++L  PSAF  +TG
Sbjct:   49 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALA-QAGAEILTYPSAFGSITG 234          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT1_BOVIN (Nitrilase homolog 1 OS=Bos taurus GN=NIT1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.994e-36
Identity = 84/199 (42.21%), Postives = 122/199 (61.31%), Query Frame = 1
Query:   13 MAGASSVR----VAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSD---DAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVA-VDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            MA +SS      VAV Q+TS  D   NF T + L++EAA  GA L  LPE F ++     ++ +++E L G +++ Y  LARE  +WLSLGGF E+G D      + N HV++++ G++ +TYRK HL DV+IPG    +ES+ T  G  + + + +P G++G  +CYD+RFPEL   L  Q  A++L  PSAF  VTG
Sbjct:   38 MAASSSFSELPLVAVCQVTSTPDKEQNFKTCAELIREAARLGACLAFLPEAFDFIARDPEETRRLSEPLSGNLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVIMNNMGSVVATYRKTHLCDVEIPGQGPMRESNSTIPGPSLESPISTPAGKIGLAICYDMRFPELSLAL-VQAGAEILTYPSAFGSVTG 235          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT1_RAT (Nitrilase homolog 1 OS=Rattus norvegicus GN=Nit1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.035e-35
Identity = 82/187 (43.85%), Postives = 116/187 (62.03%), Query Frame = 1
Query:   37 VAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSD---DAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDI-VAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            VAV Q+TS  +   NF T + LV+EA   GA L  LPE F ++     ++L ++E LDG ++  Y  LARE  +WLSLGGF E+G D      + N HVL++  G++ ++YRK HL DV+IPG    +ES++T  G  +   V +P G++G  +CYD+RFPEL  +L  Q  A++L  PSAF  VTG
Sbjct:   14 VAVCQVTSTPNKQENFKTCAELVQEATRLGACLAFLPEAFDFIARNPAETLLLSEPLDGDLLGQYSQLARECGIWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESNYTMPGYALEPPVKTPAGKVGLAICYDMRFPELSLKLA-QAGAEILTYPSAFGSVTG 199          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT1_MOUSE (Nitrilase homolog 1 OS=Mus musculus GN=Nit1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.533e-35
Identity = 81/187 (43.32%), Postives = 118/187 (63.10%), Query Frame = 1
Query:   37 VAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSD---DAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDI-VAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            VAV Q+TS  +   NF T + LV+EAA  GA L  LPE F ++     ++L ++E L+G ++  Y  LARE  +WLSLGGF E+G D   +  + N HVL++  G++ ++YRK HL DV+IPG    +ES++T+ G  +   V +P G++G  +CYD+RFPEL  +L  Q  A++L   SAF  VTG
Sbjct:   45 VAVCQVTSTPNKQENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETLLLSEPLNGDLLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESNYTKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLKLA-QAGAEILTYSSAFGSVTG 230          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NFT1_DROME (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 73/186 (39.25%), Postives = 107/186 (57.53%), Query Frame = 1
Query:   28 SVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            S  +AV QM S +D AAN +    LV  A S  A +L LPE   +VG+    +++++E LDG +M  Y  LA+ + +W+SLGG  E+  +D  + N HVL+++ G + + YRK+H+FDV     R  +  + T        V +PVG++G  +CYDLRF E    LR +  A +L  PSAFT  TG
Sbjct:   32 SATIAVGQMRSTSDKAANLSQVIELVDRAKSQNACMLFLPECCDFVGESRTQTIELSEGLDGELMAQYRELAKCNKIWISLGGVHER--NDQKIFNAHVLLNEKGELAAVYRKLHMFDVTTKEVRLRESDTVTPGYCLERPVSTPVGQIGLQICYDLRFAEPAVLLR-KLGANLLTYPSAFTYATG 214          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: Y601_SYNY3 (UPF0012 hydrolase sll0601 OS=Synechocystis sp. (strain PCC 6803) GN=sll0601 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.370e-22
Identity = 68/185 (36.76%), Postives = 102/185 (55.14%), Query Frame = 1
Query:   40 AVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLC-NTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAV--DSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            A  QMTS  +L  N   +  L+  A   GA+L+ LPENF+++G++  + L+ A  +     +   ++A+   + +  GGF    + +A    NT  L+   G   + Y K+HLFDV++P G +Y ES+   AG+    V      G LG ++CYD+RFPELY+ L  Q  A VL VP+AFT  TG
Sbjct:    7 AALQMTSRPNLTENLQEAEELIDLAVRQGAELVGLPENFAFLGNET-EKLEQATAIATATEKFLQTMAQRFQVTILAGGFPFPVAGEAGKAYNTATLIAPNGQELARYHKVHLFDVNVPDGNTYWESATVMAGQKYPPVYHSDSFGNLGLSICYDVRFPELYRYLSRQ-GADVLFVPAAFTAYTG 189          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: YAUB_SCHPO (UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe GN=SPAC26A3.11 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.401e-22
Identity = 63/196 (32.14%), Postives = 105/196 (53.57%), Query Frame = 1
Query:    4 SVIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLD--GPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            S++     + R+ + Q+ +  D + N   +   V EAA  G+ ++ LPE F+      G   + AE ++   P  Q   S+A+++  +L  G   E+   D  L NT ++ D +G + + +RK+HLFD+DIPGG S++ES     G  +  VD+  G+ G  +CYD+RFPEL   +  ++   V++ P AF   TG
Sbjct:   35 SLVPKDFRAFRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGT-GYFNQYAEPIEESSPSYQALSSMAKDTKTYLFGGSIPER--KDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPEL-AMIAARNGCSVMIYPGAFNLSTG 226          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_YEAST (Probable hydrolase NIT2 OS=Saccharomyces cerevisiae GN=NIT2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 72/195 (36.92%), Postives = 100/195 (51.28%), Query Frame = 1
Query:   34 RVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCS---LARESS--MWLSLGGFQEKGSDDA-----HLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIV-AVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            RVAVAQ+ S  DL  N      L+ EA    A ++ LPE   Y+      S  +A+     I Q   S   L R++S  + +S+G        D       + N  + +D  G I   Y+K+HLFDVD+P G   KES   + GK I   ++SP+G+LG  +CYD+RFPE   +LR    A++L  PSAFT  TG
Sbjct:    7 RVAVAQLCSSADLTKNLKVVKELISEAIQKKADVVFLPEASDYLSQNPLHSRYLAQKSPKFIRQLQSSITDLVRDNSRNIDVSIGVHLPPSEQDLLEGNDRVRNVLLYIDHEGKILQEYQKLHLFDVDVPNGPILKESKSVQPGKAIPDIIESPLGKLGSAICYDIRFPEFSLKLR-SMGAEILCFPSAFTIKTG 200          
The following BLAST results are available for this feature:
BLAST of CX288559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
NIT1_DICDI1.362e-3947.64Nitrilase homolog 1 OS=Dictyostelium discoideum GN... [more]
NFT1_CAEEL1.409e-3643.78Nitrilase and fragile histidine triad fusion prote... [more]
NIT1_HUMAN6.994e-3644.92Nitrilase homolog 1 OS=Homo sapiens GN=NIT1 PE=1 S... [more]
NIT1_BOVIN6.994e-3642.21Nitrilase homolog 1 OS=Bos taurus GN=NIT1 PE=2 SV=... [more]
NIT1_RAT2.035e-3543.85Nitrilase homolog 1 OS=Rattus norvegicus GN=Nit1 P... [more]
NIT1_MOUSE4.533e-3543.32Nitrilase homolog 1 OS=Mus musculus GN=Nit1 PE=2 S... [more]
NFT1_DROME9.155e-2839.25Nitrilase and fragile histidine triad fusion prote... [more]
Y601_SYNY33.370e-2236.76UPF0012 hydrolase sll0601 OS=Synechocystis sp. (st... [more]
YAUB_SCHPO4.401e-2232.14UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces ... [more]
NIT2_YEAST1.672e-2136.92Probable hydrolase NIT2 OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02001G06SK IF1 Citrus clementina cDNA clone C02001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288559 ID=CX288559; Name=CX288559; organism=Citrus clementina; type=EST; length=586bp
GACTCAGTCATCATGGCAGGCGCTAGCTCAGTCCGAGTCGCCGTTGCTCA
GATGACGTCGATCAACGACCTCGCCGCCAATTTCGCTACCTCCTCTCGCC
TCGTCAAAGAAGCAGCTTCTGCTGGGGCAAAACTGCTGTGCCTTCCCGAA
AATTTCTCTTACGTCGGTGACAAGGATGGGGACAGTCTTAAAGTTGCCGA
AACTTTAGATGGGCCAATAATGCAAGGATACTGCTCTCTAGCTAGAGAGT
CCAGCATGTGGCTGTCTCTTGGTGGCTTCCAAGAAAAGGGATCTGATGAT
GCACACTTGTGTAACACACATGTTCTGGTAGATGACGCTGGGAACATTAG
AAGCACTTATAGGAAAATGCACTTGTTTGATGTGGACATTCCTGGTGGAA
GGTCATACAAGGAAAGTAGTTTTACGGAGGCAGGAAAGGATATTGTTGCA
GTAGACAGCCCCGTTGGACGTTTGGGTCCAACAGTTTGCTATGATCTGAG
ATTTCCAGAACTTTATCAGCAACTTAGGTTCCAACATGAAGCTCAGGTTC
TATTGGTGCCTTCAGCTTTCACAAAAGTAACTGGTC
back to top