CX288562

Overview
NameCX288562
Unique NameCX288562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15378 contig Ccv1_Contig15378:139..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 7.952e-99
Identity = 175/199 (87.94%), Postives = 185/199 (92.96%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            NITSNTLVVLE+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADGTCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG SVKEFVEACKKAT   IK+ Y PRR GDYA
Sbjct:  171 NITSNTLVVLETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYA 369          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 1.500e-97
Identity = 174/199 (87.44%), Postives = 183/199 (91.96%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            NITSNTL VLE+MARH V  LIYSSTCATYGEPEKMPITE+TPQ PINPYGKAKKMAED+ILDFSKNSDMAVMILRYFNVIGSDP GRLGEAPRPELRE GRISGACFDAARG I GL+VKGTDY T+DGTC+RDYIDV DLVDAHVKALE+AQP+KVGIYNVGTGKGRSVKEFVEACKKAT   IKV + PRRPGDYA
Sbjct:  195 NITSNTLGVLEAMARHKVKKLIYSSTCATYGEPEKMPITEDTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGRLGEAPRPELREQGRISGACFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALEKAQPRKVGIYNVGTGKGRSVKEFVEACKKATGVEIKVDFLPRRPGDYA 393          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 354.755 bits (909), Expect = 1.959e-97
Identity = 175/199 (87.94%), Postives = 183/199 (91.96%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            NITSNTLVVLE+MA HGV TLIYSSTCATYGEPEKMPITEETPQ PINPYGKAKKMAEDIILDFSKNS MAVMILRYFNVIGSDPEGRLGEAPRPEL EHGRISGACFDAARGII GL++KGTDY T DGTCVRDYIDV DLVDAHVKALE+A+P+KVGI+NVGTGKG SVKEFVEACKKAT  +IKV Y  RR GDYA
Sbjct:  170 NITSNTLVVLETMAAHGVKTLIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDIILDFSKNSIMAVMILRYFNVIGSDPEGRLGEAPRPELSEHGRISGACFDAARGIIPGLQIKGTDYKTVDGTCVRDYIDVTDLVDAHVKALEKAKPRKVGIFNVGTGKGSSVKEFVEACKKATGVDIKVDYLERRAGDYA 368          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 2.558e-97
Identity = 172/199 (86.43%), Postives = 184/199 (92.46%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            NITSNTLVVLE++ARH V  LIYSSTCATYGEP+KMPI E TPQ PINPYGKAKKMAED+ILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAP+PELREHGRISGACFDAARG+I GL+VKGTDY T DGTCVRDYIDV DLVDAHVKALE+A+P+ VGIYNVGTGKGRSVKEFVEACKKAT  +IKV + PRRPGDYA
Sbjct:  170 NITSNTLVVLEAVARHKVKKLIYSSTCATYGEPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDGTCVRDYIDVTDLVDAHVKALEKAKPRNVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDFLPRRPGDYA 368          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 3.127e-95
Identity = 175/201 (87.06%), Postives = 182/201 (90.55%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            NITSNTLVVLE+MA H V TLIYSSTCATYGEPEKMPITE TPQ PINPYGKAKKMAEDIILDFSK+  +DMAVMILRYFNVIGSDPEGRLGEAP+PELREHGRISGACFDAA GII GLKVKGTDY T DGTCVRDYIDV DLVDAHVKAL +A+  KVGIYNVGTGKGRSVKEFVEACKKAT  +IKV Y PRRPGDYA
Sbjct:  173 NITSNTLVVLEAMAAHNVRTLIYSSTCATYGEPEKMPITEGTPQFPINPYGKAKKMAEDIILDFSKSKKADMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNKAERGKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDYFPRRPGDYA 373          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 4.515e-94
Identity = 169/200 (84.50%), Postives = 179/200 (89.50%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            NITSNTL++LE+MA HGV TLIYSSTCATYGEPEKMPI E T Q PINPYGKAKKMAEDIILDF+K   DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA GII GLKVKGTDY T DGTC+RDYIDV DLVDAHVKAL +A+P KVGIYNVGTG+GRSVKEFV+ACKKAT  NIK+ Y  RRPGDYA
Sbjct:  164 NITSNTLLILEAMASHGVKTLIYSSTCATYGEPEKMPIVETTRQLPINPYGKAKKMAEDIILDFTKGRKDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPTTDGTCIRDYIDVTDLVDAHVKALNKAEPSKVGIYNVGTGRGRSVKEFVDACKKATGVNIKIEYLSRRPGDYA 363          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.314e-93
Identity = 169/199 (84.92%), Postives = 179/199 (89.95%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            NITSNTL VLE+MA + V TLIYSSTCATYGEP+ MPITE TPQ PINPYGKAKKMAEDIILDFSK S+MAVMILRYFNVIGSDP GRLGEAPRPELREHGRISGACFDAA GII GLKV+GTDY TADGTC+RDYIDV DLVDAHVKAL++AQP KVGIYNVGTG GRSVKEFVEACK AT A+IKV +  RRPGDYA
Sbjct:  150 NITSNTLTVLEAMAAYNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYA 348          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: EXOB_RHIME (UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=exoB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 87/198 (43.94%), Postives = 113/198 (57.07%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGI-YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N    TL +L +    G+D  ++SSTCATYG P+ +P+ E   QAPINPYG+ K + E  + D+     +  +ILRYFN  G+D EGR+GE   PE            DAA G   G KV GTDY T DGTCVRDYI V DL DAHV+A++        +  N+GTG G +VKE ++A +K       + Y  RR GD
Sbjct:   94 NNVIGTLTLLSAALAAGIDAFVFSSTCATYGLPDSVPMDESHKQAPINPYGRTKWICEQALKDYGLYKGLRSVILRYFNAAGADFEGRIGEWHEPET----HAIPLAIDAALGRREGFKVFGTDYDTRDGTCVRDYIHVLDLADAHVRAVDYLLEGGESVALNLGTGTGTTVKELLDAIEKVAKRPFNIGYAERREGD 287          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: EXOB_RHILT (UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii GN=exoB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.975e-37
Identity = 84/198 (42.42%), Postives = 115/198 (58.08%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGI-YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N    TL +L +    G++  ++SSTCATYG P+ +P+ E   Q PINPYG+ K + E  + D+ +   +  ++LRYFN  G+D EGR+GE  +PE            DAA G   G KV G+DY T DGTCVRDYI V DL DAHV+A+E        +  N+GTG G +VKE + A ++ ++    V Y  RR GD
Sbjct:   94 NNVIGTLTLLSAAQAAGINAFVFSSTCATYGLPQSVPLDETHRQVPINPYGRTKYIVEQALADYDQYGSLRSVVLRYFNAAGADFEGRIGEWHQPET----HAIPLAIDAALGRRQGFKVFGSDYETRDGTCVRDYIHVLDLADAHVRAVEYLLKGGDSVALNLGTGTGTTVKELLGAIEEVSNRPFPVEYIGRREGD 287          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: EXOB_AZOBR (UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.074e-37
Identity = 87/200 (43.50%), Postives = 118/200 (59.00%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVG---IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N T+N+L +L +  R G+D +++SST A YG PE +PI E+ P  PINPYG +K M E ++ D      +  +ILRYFNV G+DP GR G+A    +  H  I  AC  A  G    L + GTDY T DGTC+RDYI V+DL DAHV AL     ++ G   + N G G+G SV+E V   ++ +   +   +  RRPGD
Sbjct:  100 NNTANSLTLLGACLRAGIDKVVFSSTAAVYGAPESVPIREDAPTVPINPYGASKLMTEQMLRDAGAAHGLRSVILRYFNVAGADPAGRTGQA--TPVATH-LIKVAC-QALLGRRPPLAIFGTDYDTPDGTCIRDYIHVSDLADAHVLAL--LHLRRGGGSLLMNCGYGRGASVREVVRTLEEVSGEQVPATFADRRPGD 293          
The following BLAST results are available for this feature:
BLAST of CX288562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
ARAE1_ARATH7.952e-9987.94UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]
ARAE4_ARATH1.500e-9787.44Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
ARAE2_ARATH1.959e-9787.94Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
ARAE3_ARATH2.558e-9786.43Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
ARAE1_ORYSJ3.127e-9587.06Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
ARAE3_ORYSJ4.515e-9484.50Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
ARAE2_ORYSJ1.314e-9384.92Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
EXOB_RHIME7.080e-3943.94UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=e... [more]
EXOB_RHILT2.975e-3742.42UDP-glucose 4-epimerase OS=Rhizobium leguminosarum... [more]
EXOB_AZOBR5.074e-3743.50UDP-glucose 4-epimerase OS=Azospirillum brasilense... [more]

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Properties
Property NameValue
Genbank descriptionC02001G09SK IF1 Citrus clementina cDNA clone C02001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288562 ID=CX288562; Name=CX288562; organism=Citrus clementina; type=EST; length=597bp
AACATTACGTCAAATACCTTGGTAGTATTGGAGTCAATGGCCAGACATGG
CGTGGATACTTTGATATATTCCAGTACATGCGCAACATACGGAGAGCCTG
AAAAGATGCCCATTACTGAAGAAACTCCACAGGCTCCAATTAATCCATAT
GGTAAAGCTAAGAAGATGGCAGAAGATATCATCCTGGACTTCTCTAAAAA
TTCAGACATGGCAGTTATGATCCTACGGTACTTCAATGTCATCGGTTCTG
ATCCAGAGGGTAGATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGCAT
GGGCGAATATCAGGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCTGG
GCTGAAGGTCAAAGGAACAGACTACAGTACAGCAGATGGAACTTGTGTTC
GTGATTATATTGACGTCAATGATCTGGTTGATGCTCATGTCAAAGCTCTT
GAGAGGGCACAACCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGAAA
AGGGAGATCGGTAAAGGAGTTTGTTGAGGCATGTAAAAAAGCAACATCGG
CAAATATCAAAGTTATATATGAACCTCGCCGCCCAGGTGACTATGCT
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