CX288567

Overview
NameCX288567
Unique NameCX288567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig400 contig Ccv1_Contig400:25..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe GN=cox12 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.809e-21
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  362 DQEASEETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFP 604
            +QE  E   +    T   D RFP TNQT+HCF  YI+Y RC+ AKGE    C +F   Y++LCP +W+E+W+EQRENGTFP
Sbjct:    3 EQEDQEAPKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFP 83          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: COX12_YEAST (Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae GN=COX12 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  398 LETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTF 601
            L T   D RFP  NQT+HC+  Y++YH+CV  KGE    C  F K Y ALCP DWIEKW++QRE G F
Sbjct:    9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQREKGIF 76          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: CX6B1_PONAB (Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  380 ETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFP 604
            ET     +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP+ W+  W+EQR  GTFP
Sbjct:    6 ETKLKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFP 83          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: CX6B1_MACMU (Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  374 SEETPEIKLE---TAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFP 604
            +EE  E K++   TAP D RFP  NQTR+C+  Y+++HRC  A   KG     C+ + + Y++LCP+ W+  W+EQR  GTFP
Sbjct:    2 AEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFP 84          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: CX6B1_MACFA (Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  374 SEETPEIKLE---TAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFP 604
            +EE  E K++   TAP D RFP  NQTR+C+  Y+++HRC  A   KG     C+ + + Y++LCP+ W+  W+EQR  GTFP
Sbjct:    2 AEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFP 84          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: CX6B1_HUMAN (Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  380 ETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFP 604
            ET     +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP+ W+  W+EQR  GTFP
Sbjct:    6 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFP 83          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: CX6B2_RAT (Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  404 TAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFP 604
            T P D RFP  NQTR+C+  +++YHRCV     +G+    CD + + + +LCP  W+++WNEQ + GTFP
Sbjct:   16 TPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWVQRWNEQIKQGTFP 85          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: CX6B2_HUMAN (Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  374 SEETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCV---AAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTF 601
            ++E P+ K  T P D RFP+ NQ R+C+  +++YHRC+     +G+    C+ + + Y +LCP  W+E WNEQ +NG F
Sbjct:    6 AQEPPKGKWSTPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQIKNGIF 84          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: CX6B2_MOUSE (Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  374 SEETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFP 604
            +++ P  +  T P D RFP  NQTR+C+  +++YHRCV     +G+    C+ + + + +LCP  W+++WNEQ + GTFP
Sbjct:    6 AQKPPPGQWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPISWVQRWNEQIKQGTFP 85          
BLAST of CX288567 vs. ExPASy Swiss-Prot
Match: CX6B1_BOVIN (Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  401 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFP 604
            +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP  W+  W+++R  GTFP
Sbjct:   13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFP 83          
The following BLAST results are available for this feature:
BLAST of CX288567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COX12_SCHPO6.809e-2151.85Cytochrome c oxidase subunit 6B OS=Schizosaccharom... [more]
COX12_YEAST1.202e-1755.88Cytochrome c oxidase subunit 6B OS=Saccharomyces c... [more]
CX6B1_PONAB1.469e-1544.87Cytochrome c oxidase subunit 6B1 OS=Pongo abelii G... [more]
CX6B1_MACMU1.469e-1544.58Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta... [more]
CX6B1_MACFA1.469e-1544.58Cytochrome c oxidase subunit 6B1 OS=Macaca fascicu... [more]
CX6B1_HUMAN1.469e-1544.87Cytochrome c oxidase subunit 6B1 OS=Homo sapiens G... [more]
CX6B2_RAT7.292e-1544.29Cytochrome c oxidase subunit 6B2 OS=Rattus norvegi... [more]
CX6B2_HUMAN7.292e-1540.51Cytochrome c oxidase subunit 6B2 OS=Homo sapiens G... [more]
CX6B2_MOUSE9.523e-1538.75Cytochrome c oxidase subunit 6B2 OS=Mus musculus G... [more]
CX6B1_BOVIN1.244e-1443.66Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02001H03SK IF1 Citrus clementina cDNA clone C02001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288567 ID=CX288567; Name=CX288567; organism=Citrus clementina; type=EST; length=605bp
CAGCAGCTGAAGAAAGTAGATCGCTTTTTGCCCATCAATGGCGGAAGCCC
AAAGCGACAAAACTCCCTCCCTAGCCGAGGATTATTTGTTGGAAAAAGAG
AAGCAAGATGTAGCTACAAAACCTGTGGTAGTAAAAGAAGTTGAGAGTGC
AGTGACTGCCTCTTCTGTGGAAGGTGCCACTGATAAAGTTGAAGAAACAC
CTGCTGCCGCCGCTGTTGAAGAAAGCAAAGAAGACGCCCCTGCTCCTGCC
GCTGAAGAAAGCACTGAAGCCAGTTCTGCTTCTCCTGAGGACAGCACTAG
TGATACGGCTCCAGCTGCTGCTGAGGAAAGCAGTGAAACTACGGAAGAGG
AAAACTCAGGTGATCAGGAAGCCTCAGAAGAGACACCAGAAATAAAGCTG
GAGACTGCACCGGCAGATTTCCGTTTCCCAACCACAAATCAAACAAGGCA
CTGCTTTACCCGATATATTGAGTATCATCGGTGTGTAGCTGCTAAGGGAG
AGGGTGCTCCAGAGTGTGATAAGTTTGCAAAATATTACCGTGCTCTGTGC
CCTAGTGACTGGATAGAAAAATGGAATGAGCAAAGAGAAAACGGAACCTT
TCCCG
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