CX288568

Overview
NameCX288568
Unique NameCX288568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288568 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.977e-14
Identity = 51/136 (37.50%), Postives = 71/136 (52.21%), Query Frame = -1
Query:   34 VAWMRPPPGVVKLTVDGCSRGNPGMAASGGILRDYRGVSLAAFSSFLGHQPILYAELMAVCEGLELAARLGHSVLEVESDSATVVSWIHSQGPVRWDYSYLLRRACR--LISSASIQVRHVLREATSAADFLANWA 435
            + W+ P  G VK+  DG SRGNPG+A++GG+LRD  G     FS  +G      AEL  V  GL  A       +E+E DS  +V ++ +        S+L+ R C   L     +++ HV REA   AD LAN+A
Sbjct:  450 IGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLV-RLCHGFLQKDWLVRIVHVYREANRLADGLANYA 584          
The following BLAST results are available for this feature:
BLAST of CX288568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RNHX1_ARATH2.977e-1437.50Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC02001H04SK IF1 Citrus clementina cDNA clone C02001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288568 ID=CX288568; Name=CX288568; organism=Citrus clementina; type=EST; length=492bp
GGAAGAAAAATGCCGACTAGATCGATGAGTGCATGCCCAGTTGGCTAAGA
AATCCGCTGCGGAAGTAGCCTCGCGAAGAACATGTCTCACCTGAATGGAA
GCGGAAGATATCAGGCGACACGCCCGACGGAGAAGGTAAGAATAATCCCA
TCGGACTGGACCCTGAGAGTGAATCCATGAAACCACCGTAGCCGAGTCCG
ACTCTACCTCAAGGACCGAGTGGCCAAGCCGTGCTGCTAACTCCAAACCC
TCACAAACCGCCATGAGCTCAGCGTATAAGATGGGCTGGTGGCCCAAGAA
GGAACTAAATGCGGCTAGGGAAACACCCCGATAATCCCGTAAGATGCCCC
CGGAAGCAGCCATCCCAGGGTTGCCCCTCGAACAACCATCCACTGTCAGC
TTGACCACTCCAGGTGGCGGTCTCATCCAGGCAACAAATCGAACCGGTCT
CACAGGCGGTACCAGAACTCTGAGTCCCTCCAAAAACCGAGA
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