CX288570

Overview
NameCX288570
Unique NameCX288570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288570 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.674e-88
Identity = 154/195 (78.97%), Postives = 177/195 (90.77%), Query Frame = 3
Query:  102 QEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLK 686
            +EIKFEP VMCE I+K+ +FR  Q+EDGDIIC+QK   IE   +FRYP+VPSFL+YV NR++V FR+LEKPKED+F +E+SKL+TYDDVVERVA++LGLDDPSK+RLTSHNCYSQQPKPQPIKYRGVDHLSDML+HYNQTSD+LYYEVLDIPLPELQ LKTLKVAFH ATKDEV +H IRLPKQSTVGDVIN+LK
Sbjct:  742 EEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIEE-SEFRYPDVPSFLEYVQNRELVRFRTLEKPKEDEFTMELSKLHTYDDVVERVAEKLGLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHSATKDEVIIHNIRLPKQSTVGDVINELK 935          
BLAST of CX288570 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 3.802e-85
Identity = 150/195 (76.92%), Postives = 174/195 (89.23%), Query Frame = 3
Query:  102 QEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLK 686
            +EIKFEP VMCE ++K+ +FR  Q+EDGDIICFQK    + + +  YP VPSFL+YV NRQ+V FR+LEKPKED+F LE+SK +TYDDVVE+VA++LGLDDPSK+RLTSHNCYSQQPKPQPIKYRGVDHLSDML+HYNQTSD+LYYEVLDIPLPELQ LKTLKVAFHHATK+EV +H IRLPKQSTVGDVIN+LK
Sbjct:  743 EEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQKPLVNKEI-ECLYPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYDDVVEKVAEKLGLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKEEVVIHNIRLPKQSTVGDVINELK 936          
The following BLAST results are available for this feature:
BLAST of CX288570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP13_ARATH3.674e-8878.97Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH3.802e-8576.92Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC02001H06SK IF1 Citrus clementina cDNA clone C02001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288570 ID=CX288570; Name=CX288570; organism=Citrus clementina; type=EST; length=686bp
TGGACACTTAATGTGTTTAATAGAGTCACCATGTCATATTTACAATTTAT
GTTTCTATATGTTATTTGGAGGATGCTATCTCACCTTTTGTTATTGATGT
TCAGGAAATTAAGTTTGAGCCCAGTGTAATGTGTGAGCCCATAGAAAAGA
GATGCACGTTTCGAGCTAGCCAGCTTGAAGATGGAGACATTATTTGCTTT
CAAAAATCTACTCCAATTGAAGGTGTTGGTAAATTTCGCTATCCGGAAGT
GCCTTCATTCTTGGACTATGTGCACAATCGCCAAGTGGTTCATTTTCGGT
CTCTTGAAAAACCCAAGGAAGATGATTTCTGTCTAGAGATGTCAAAGCTT
TATACTTATGATGACGTTGTAGAAAGAGTAGCTCAGCAACTGGGTTTGGA
TGATCCATCTAAGATCAGGCTCACATCACACAACTGTTACTCTCAGCAAC
CTAAACCCCAACCCATTAAGTACCGTGGGGTTGATCATTTATCTGACATG
CTGATCCACTACAACCAGACTTCTGATGTATTATATTATGAAGTATTGGA
CATTCCACTTCCAGAATTACAATGTCTGAAAACACTCAAAGTCGCGTTTC
ATCATGCTACCAAGGATGAAGTGAGCGTTCATACTATTAGACTACCAAAG
CAGAGTACTGTAGGGGATGTGATTAATGATCTTAAA
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