CX288571

Overview
NameCX288571
Unique NameCX288571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig133 contig Ccv1_Contig133:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.116e-80
Identity = 138/161 (85.71%), Postives = 154/161 (95.65%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            PFSNAFYRGLTDLISP+WLKLFNA EFNQLLSGG HDIDVDDLR+NT+YTGGYS+ SRTIK+FWEV++GFEP ERC+LLKFVTSCSRAPLLGFK+LQP+F IHKV+CD+SLWA IGGQDVERLPSASTCYNTLKLPTYKR+ST++ KLLYAI+SNAGFELS
Sbjct:  982 PFSNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLPTYKRASTMREKLLYAITSNAGFELS 1142          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.339e-38
Identity = 81/161 (50.31%), Postives = 105/161 (65.22%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            P   AF +GL +++S  WL++F+  E   L+SG +  + ++DL+  T Y+GGYS     IK+FW VVEGF  +E+  LLKFVTSCSR PLLGFK L P+F IH            GG D+ERLP+ASTC N LKLP +   + L++KLLYAI   AGFELS
Sbjct:  934 PHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHN-----------GGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAIECAAGFELS 1083          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.285e-38
Identity = 81/157 (51.59%), Postives = 104/157 (66.24%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            AF +GL +++S  WL++F+  E   L+SG +  I ++DL+  T Y+GGYS     IK+FW VVEGF  +E+  LLKFVTSCSR PLLGFK L P+F IH            GG D+ERLP+ASTC N LKLP +   + L++KLLYAI   AGFELS
Sbjct:  938 AFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHN-----------GGSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAIECAAGFELS 1083          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.526e-37
Identity = 75/159 (47.17%), Postives = 101/159 (63.52%), Query Frame = 1
Query:    7 SNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            S+ F RG   LI   W+ +FN  E   L+SG    +D+DDLR NT Y GGY  G   I +FWEV++ F  + +   LKFVT CSR PLLGFK+L+P+F I + A  +S       + V+RLP+++TC N LKLP Y+    L+ KL+YAIS+ AGF+LS
Sbjct:  877 SSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSAS------NESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAISAEAGFDLS 1029          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 75/157 (47.77%), Postives = 94/157 (59.87%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            AF  G T +I P WL +F+ SE   L+ G    ID+DDLR++T Y GGY   S TI LFWEV+  FE +++   +KFVTS +R P+LGFK L PSF I            + G+D  RLP+ASTC N LKLP Y    TL+ KLL A+ S  GF  S
Sbjct:  884 AFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCIR-----------VNGEDETRLPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSGVGFGFS 1029          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.297e-33
Identity = 76/158 (48.10%), Postives = 102/158 (64.56%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            +AF+ GL+ +I+P W+++FN+ E   L+SG R +ID+DDL+ NT Y GGY E  +TI  FWEV+  F+ +E+   LKFVTS  +APL GFK L P F I              G +  RLP+ASTC N LKLP Y+  + L+ KLLYAI+S A F+LS
Sbjct:  765 SAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEY-GGYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKALDPKFGIRN-----------AGTEKYRLPTASTCVNLLKLPDYRNKTILREKLLYAINSGARFDLS 910          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 2.890e-33
Identity = 75/171 (43.86%), Postives = 104/171 (60.82%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEG-FEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDS------SLWAVIGG-------QDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            A   G   +I P W+++F+  E  +L+SG   +ID++DL+K+T Y GG+    R I   W+++   F P+ER M LKFVTSCSR PLLGF +L+P F+I  V          +L +V+ G       +   RLP++STC+N LKLP Y + S L+ KL YAIS N GFELS
Sbjct:  900 ALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTGFELS 1070          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UBE3B_XENTR (Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.930e-33
Identity = 75/171 (43.86%), Postives = 104/171 (60.82%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVV-EGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACD------SSLWAVIGG-------QDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            AF  G   +I P W+++F+A E  +L+SG   +ID+DDL+K+T Y GG+    R I   W+++   F  +E+ M LKFVTSCSR PLLGF +L+P F+I  V          +L +V+ G       +   RLP++STC+N LKLP Y +   L+ KL YAIS N GFELS
Sbjct:  902 AFISGFRSIIRPEWIRMFSAPELQRLISGDNAEIDLDDLKKHTVYYGGFHGSHRVIIWLWDILANDFSSEEKAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKKEPGGRLPTSSTCFNLLKLPNYSKKGILREKLRYAISMNTGFELS 1072          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.930e-33
Identity = 75/171 (43.86%), Postives = 103/171 (60.23%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEG-FEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDS------SLWAVIGG-------QDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            A   G   +I P W+++F+  E  +L+SG   +ID++DL+K+T Y GG+    R I   W+++   F P ER M LKFVTSCSR PLLGF +L+P F+I  V          +L +V+ G       +   RLP++STC+N LKLP Y + S L+ KL YAIS N GFELS
Sbjct:  898 ALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTGFELS 1068          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 68/164 (41.46%), Postives = 87/164 (53.05%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI-SSNAGF 474
            P  NAF  GL +LI    + +FN  E   L+SG   +ID DDL+ NT YT  Y+ GS  I+ FWEVV+ F  ++    L+FVT  S+ PL GFK LQ         IHK                ERLPSA TC+N L LP Y+    ++ +LL AI  +N GF
Sbjct: 3505 PQINAFLEGLNELIPRELVSIFNDKELELLISG-LPEIDFDDLKANTEYTS-YTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAY-----------GSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGF 3655          
The following BLAST results are available for this feature:
BLAST of CX288571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
UPL7_ARATH4.116e-8085.71E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]
UBE3C_MOUSE1.339e-3850.31Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ub... [more]
UBE3C_HUMAN2.285e-3851.59Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
UPL6_ARATH2.526e-3747.17E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
YFK7_SCHPO7.605e-3447.77Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]
HUL5_YEAST1.297e-3348.10Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
UBE3B_MOUSE2.890e-3343.86Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
UBE3B_XENTR4.930e-3343.86Ubiquitin-protein ligase E3B OS=Xenopus tropicalis... [more]
UBE3B_HUMAN4.930e-3343.86Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]
UPL2_ARATH2.295e-2241.46E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02001H07SK IF1 Citrus clementina cDNA clone C02001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288571 ID=CX288571; Name=CX288571; organism=Citrus clementina; type=EST; length=630bp
CCCTTCTCAAATGCATTTTACAGAGGTTTAACTGATCTCATATCACCATC
TTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTACTTTCAGGAG
GAAGACATGACATTGATGTAGATGATTTGAGAAAAAATACACGGTATACC
GGTGGCTATTCTGAAGGGAGTCGAACAATTAAACTCTTTTGGGAGGTTGT
TGAAGGATTTGAACCAAAAGAACGATGTATGCTGCTTAAATTTGTGACAA
GTTGCTCTCGAGCTCCATTGCTTGGATTCAAACACTTGCAGCCATCTTTT
ACAATTCACAAGGTTGCATGTGATTCGTCGCTTTGGGCAGTCATTGGCGG
ACAGGATGTAGAACGGCTTCCGTCGGCTTCTACATGCTACAATACTCTCA
AGCTTCCTACATACAAGCGTTCAAGCACTTTGAAAGCAAAACTTCTTTAT
GCAATCAGTTCCAATGCTGGGTTTGAACTTTCTTAGGGATCTGACTATTT
CTGCTTCAGGTGAATGAATTTGTCATGCACTTCTTGTCCCTGAATCCTTA
CTTCTACTCTCAACTGAAAACGCTTCTGATTGCTACTGATCGCAAAGACT
GTAAAAAAAAAAAAATCTGTCATGTGGAAT
back to top