CX288572

Overview
NameCX288572
Unique NameCX288572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14318 contig Ccv1_Contig14318:281..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.477e-48
Identity = 94/181 (51.93%), Postives = 125/181 (69.06%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 554
            I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G
Sbjct:  281 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 461          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.477e-48
Identity = 94/181 (51.93%), Postives = 125/181 (69.06%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 554
            I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G
Sbjct:  282 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 462          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.477e-48
Identity = 94/181 (51.93%), Postives = 125/181 (69.06%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 554
            I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G
Sbjct:  282 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 462          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 2.520e-48
Identity = 94/181 (51.93%), Postives = 124/181 (68.51%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 554
            I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA  +G
Sbjct:  282 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTG 462          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.133e-47
Identity = 92/181 (50.83%), Postives = 125/181 (69.06%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 554
            I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   +ADP AA  +V    GVL+ I PGK Y+DMSTVD ET  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ +Y++  S    +GK +FFLGEVGN A+M L++NM+ G  M T +EG+ LA+ +G
Sbjct:  263 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLAQVTG 443          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 4.752e-47
Identity = 92/181 (50.83%), Postives = 124/181 (68.51%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 554
            I  NLL+ G  VTVW+RT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I P K Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G
Sbjct:  282 IVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 462          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.080e-46
Identity = 90/179 (50.28%), Postives = 125/179 (69.83%), Query Frame = 3
Query:   21 NLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 554
            NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y++MSTVD ET  ++S+ ITS+GG FLEAPVSGS+Q +  G LVI++AG++++Y++  S    +GK +FF+ GE GN A+M L++NM+ G  M T +EGL LA+ +G
Sbjct:  193 NLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATG 371          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.809e-45
Identity = 92/181 (50.83%), Postives = 122/181 (67.40%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 554
            I  NLL+ G  VTVWNRT  K       GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G
Sbjct:  281 IVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 455          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.597e-40
Identity = 80/179 (44.69%), Postives = 115/179 (64.25%), Query Frame = 3
Query:   21 NLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGL 557
            NLL +G  V VWNRT +KC +    GA V  +P++VI+   +T   +ADP  A  +VF   GV+     GKGY++M+ VD ETS  I+  I +KGG +LEA + GSK  AE G L+IL+AGE+ L++E  +    I + +F++G+VGN  KM LV+ MI G M+   +EGL LA+++GL
Sbjct:  291 NLLNSGHSVVVWNRTATKCRKFQEAGAEVADTPSDVIEMTDVTFSCVADPQVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGERLLFEECQTCFEAISRNSFYMGDVGNATKMNLVLQMISGVMLAGIAEGLALADRAGL 469          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 75/182 (41.21%), Postives = 115/182 (63.19%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGL 557
            I  NL+++G  V VWNR+  KC +    GA V  +P++V++   +T   ++DP  A  +VF   GV+     GKGY++M+ VD ETS  I+ AI SKGG +LEA + GSK  AE G L+IL++G++ L++E  S    I + +F+LG+VGN  KM L++ MI G  +   +E + LA+++GL
Sbjct:  295 IVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTYSCVSDPQVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDRLLFEECQSCFEAISRNSFYLGDVGNATKMNLILQMISGITLAGVAEAMALADRAGL 476          
The following BLAST results are available for this feature:
BLAST of CX288572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GLYR1_RAT1.477e-4851.93Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_CHICK1.477e-4851.93Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_BOVIN1.477e-4851.93Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_HUMAN2.520e-4851.93Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_XENTR2.133e-4750.83Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_PONAB4.752e-4750.83Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_DANRE3.080e-4650.28Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_MOUSE5.809e-4550.83Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
GLYR1_AEDAE9.597e-4044.69Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]
GLYR1_ANOGA1.532e-3741.21Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]

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Properties
Property NameValue
Genbank descriptionC02001H08SK IF1 Citrus clementina cDNA clone C02001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288572 ID=CX288572; Name=CX288572; organism=Citrus clementina; type=EST; length=564bp
GCACGAGGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTACT
GTATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTGC
TACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTA
TTGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAA
GGTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGTC
AACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAA
AAGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCA
GAAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGA
TGAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGG
GGGAGGTCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAATG
GGCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAG
TGGACTTGACCCTC
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