CX288578

Overview
NameCX288578
Unique NameCX288578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288578 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 5.054e-65
Identity = 114/149 (76.51%), Postives = 135/149 (90.60%), Query Frame = 1 
Query:  115 QEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVL 561
            +EIKFEP VMCE I+K+ +FR  Q+EDGDIIC+QK   IE   +FRYP+VPSFL+YV NR++V FR+LEKPKED+F +E+SKL+TYDDVVERVA++LGLDDPSK+RLTSHNCYSQQPKPQPIKYRGVDHLSDML+HYNQTSD+LYYEVL
Sbjct:  742 EEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIEE-SEFRYPDVPSFLEYVQNRELVRFRTLEKPKEDEFTMELSKLHTYDDVVERVAEKLGLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVL 889
[Close]
BLAST of CX288578 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 1.987e-61
Identity = 110/149 (73.83%), Postives = 131/149 (87.92%), Query Frame = 1 
Query:  115 QEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVL 561
            +EIKFEP VMCE ++K+ +FR  Q+EDGDIICFQK    + + +  YP VPSFL+YV NRQ+V FR+LEKPKED+F LE+SK +TYDDVVE+VA++LGLDDPSK+RLTSHNCYSQQPKPQPIKYRGVDHLSDML+HYNQTSD+LYYEVL
Sbjct:  743 EEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQKPLVNKEI-ECLYPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYDDVVEKVAEKLGLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVL 890
The following BLAST results are available for this feature:
BLAST of CX288578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP13_ARATH5.054e-6576.51Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH1.987e-6173.83Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC02002A03SK IF1 Citrus clementina cDNA clone C02002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288578 ID=CX288578; Name=CX288578; organism=Citrus clementina; type=EST; length=563bp
ATTCGGCACGAGGTGGACACTTAATGTGTTTAATAGAGTCACCATGTCAT
ATTTACAATTTATGTTTCTATATGTTATTTGGAGGATGCTATCTCACCTT
TTGTTATTGATGTTCAGGAAATTAAGTTTGAGCCCAGTGTAATGTGTGAG
CCCATAGAAAAGAGATGCACGTTTCGAGCTAGCCAGCTTGAAGATGGAGA
CATTATTTGCTTTCAAAAATCTACTCCAATTGAAGGTGTTGGTAAATTTC
GCTATCCGGAAGTGCCTTCATTCTTGGACTATGTGCACAATCGCCAAGTG
GTTCATTTTCGGTCTCTTGAAAAACCCAAGGAAGATGATTTCTGTCTAGA
GATGTCAAAGCTTTATACTTATGATGACGTTGTAGAAAGAGTAGCTCAGC
AACTGGGTTTGGATGATCCATCTAAGATCAGGCTCACATCACACAACTGT
TACTCTCAGCAACCTAAACCCCAACCCATTAAGTACCGTGGGGTTGATCA
TTTATCTGACATGCTGATCCACTACAACCAGACTTCTGATGTATTATATT
ATGAAGTATTGGA
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