CX288581

Overview
NameCX288581
Unique NameCX288581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288581 vs. ExPASy Swiss-Prot
Match: CQ039_MOUSE (Uncharacterized protein C17orf39 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:  141 FVYKTFYRPED-DIRHWTKFPSFAPLLSRVEADGGKSLDLSNYPYIFMRWKEQYFV---NVGTDCGLTIAGFYYVCFSCSDGSINGFYYDPNSSPFQKLEL 431
            F+ + +   ED D +HW KF +F        +D     +L N  Y+FMRWKEQ+ V    +    G + AGFYY+CF  S  SI G+YY  +S  +Q L L
Sbjct:  103 FLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYEELKNGDYVFMRWKEQFLVPDHTIKDISGASFAGFYYICFQKSAASIEGYYYHRSSEWYQSLNL 203
[Close]
BLAST of CX288581 vs. ExPASy Swiss-Prot
Match: CQ039_HUMAN (Uncharacterized protein C17orf39 OS=Homo sapiens GN=C17orf39 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:  141 FVYKTFYRPED-DIRHWTKFPSFAPLLSRVEADGGKSLDLSNYPYIFMRWKEQYFV---NVGTDCGLTIAGFYYVCFSCSDGSINGFYYDPNSSPFQKLEL 431
            F+ + +   ED D +HW KF +F        +D     +L N  Y+FMRWKEQ+ V    +    G + AGFYY+CF  S  SI G+YY  +S  +Q L L
Sbjct:  186 FLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYEELKNGDYVFMRWKEQFLVPDHTIKDISGASFAGFYYICFQKSAASIEGYYYHRSSEWYQSLNL 286
The following BLAST results are available for this feature:
BLAST of CX288581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CQ039_MOUSE3.029e-1238.61Uncharacterized protein C17orf39 homolog OS=Mus mu... [more]
CQ039_HUMAN3.029e-1238.61Uncharacterized protein C17orf39 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionC02002A06SK IF1 Citrus clementina cDNA clone C02002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288581 ID=CX288581; Name=CX288581; organism=Citrus clementina; type=EST; length=661bp
CACGAGGGCATTAATCATTTAATCTGTTAGCCTGCCGGTGATGGTGAACA
ATGATTCACTACTTTCTGGTCAATAAGAAGTGATATGAACTCCTGTAAGA
AAATAAGATGCAATTAACATGAAGCTCCTTCCCATCTTAATTTGTTTATA
AAACCTTTTACAGGCCAGAGGATGATATAAGGCACTGGACAAAGTTTCCA
TCTTTTGCGCCCCTTCTGAGTCGAGTGGAGGCTGATGGTGGCAAATCTTT
GGACCTGAGTAACTACCCATACATATTTATGAGATGGAAAGAGCAATACT
TTGTGAATGTTGGAACAGACTGTGGGCTAACTATAGCAGGATTTTACTAT
GTTTGCTTCTCTTGTAGTGATGGCTCTATTAATGGCTTCTATTATGATCC
CAATAGCAGCCCGTTTCAGAAGCTTGAGCTGAAATGTGCGAATGAGGGGA
GATCAGGATTCAGTTTTTCATCATACGAGTTACAGTGAGACAAAAACAAG
AAGCTGATGAGGCCACCAGCAACACGGATTTGACGACTCTGGTCCTGCAG
ATTCTGTCATCAGTTATTGCAGACAGGAGAATTTTCAATAGTACATCCGT
ACAAGGACTCCCAAGTCTCCAATGCATGTATATGTTTTGATGAGTCCATT
GTTGACATTGA
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