CX288584

Overview
NameCX288584
Unique NameCX288584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288584 vs. ExPASy Swiss-Prot
Match: BXL7_ARATH (Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.111e-39
Identity = 85/174 (48.85%), Postives = 111/174 (63.79%), Query Frame = 2
Query:    2 PMTWYPQDYIKVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLXXXXXXXXXXXXXQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNG--RPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVI 517
            P+TWYPQ ++ + MTDM+MR  + +G PGRTY+FY+G +V+ FG GL             +  LYLNQS   K   N D V Y  V E+G E C+  K  VT+ V+N GEMAGKHPVL+F +  R G    R  KQLVGF+S++L+  EKAE+ FE+  CE LSRA E G+MV+
Sbjct:  579 PVTWYPQSFVNIQMTDMRMR--SATGYPGRTYKFYKGPKVYEFGHGLSYSAYSYRFKTLAETNLYLNQS---KAQTNSDSVRYTLVSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVLSNGEKAEMEFEIGLCEHLSRANEFGVMVL 747          
BLAST of CX288584 vs. ExPASy Swiss-Prot
Match: BXL6_ARATH (Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.909e-26
Identity = 65/176 (36.93%), Postives = 95/176 (53.98%), Query Frame = 2
Query:    2 PMTWYPQDYIKVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLXXXXXXXXXXXXX----QNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVI 517
            P TWYP+ +  V M+DM MR  ++ G PGRTYRFY G +V+ FG GL                  ++L   QSS  K +++ + + Y  + ++    CE+ +F V + V N GE+ G H V+LF K     +G P KQL+G+  V + + E  E VF + PC+ LS A + G  VI
Sbjct:  597 PTTWYPESFTDVAMSDMHMRANSSRGYPGRTYRFYTGPQVYSFGTGLSYTKFEYKILSAPIRLSLSELLPQQSSHKKQLQHGEELRYLQLDDVIVNSCESLRFNVRVHVSNTGEIDGSHVVMLFSKMPPVLSGVPEKQLIGYDRVHVRSNEMMETVFVIDPCKQLSVANDVGKRVI 772          
BLAST of CX288584 vs. ExPASy Swiss-Prot
Match: BXL5_ARATH (Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 66/178 (37.08%), Postives = 90/178 (50.56%), Query Frame = 2
Query:    2 PMTWYPQDYI-KVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLXXXXXXXXXXXXXQNKLYLNQSSSTKMVENQDVVHYKSVP----------ELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPAR-----RGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLS 487
            P TWYPQ++  KV MTDM MRP +TSG PGR+YRFY GK ++ FG GL                     S ST ++    ++H K+ P          ++ T  C   K  + IGVKNHG  +G H VL+F KP +      G G P+ QLVGF+ V +      +   +   C++LS
Sbjct:  579 PETWYPQEFADKVAMTDMNMRPNSTSGFPGRSYRFYTGKPIYKFGYGLSY------------------SSFSTFVLSAPSIIHIKTNPIMNLNKTTSVDISTVNCHDLKIRIVIGVKNHGLRSGSHVVLVFWKPPKCSKSLVGGGVPLTQLVGFERVEVGRSMTEKFTVDFDVCKALS 738          
BLAST of CX288584 vs. ExPASy Swiss-Prot
Match: BXL3_ARATH (Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.652e-21
Identity = 64/174 (36.78%), Postives = 94/174 (54.02%), Query Frame = 2
Query:    2 PMTWYPQDYI-KVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLXXXXXXXXXXXXXQ-NKLYLNQSSSTKMVENQDV----VHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDG 505
            PMTWYPQ Y+ KVPM++M MRP  + G PGR+YRFY G+ V+ F   L             +   L L+++   +  E Q +     H ++  E G++      F V + VKN G+ AG H V LF   + + +G PIKQL+GF+ + L   E+A + F ++ C+ LS   E G
Sbjct:  583 PMTWYPQSYVEKVPMSNMNMRPDKSKGYPGRSYRFYTGETVYAFADALTYTKFDHQLIKAPRLVSLSLDENHPCRSSECQSLDAIGPHCENAVEGGSD------FEVHLNVKNTGDRAGSHTVFLFT-TSPQVHGSPIKQLLGFEKIRLGKSEEAVVRFNVNVCKDLSVVDETG 749          
BLAST of CX288584 vs. ExPASy Swiss-Prot
Match: BXL4_ARATH (Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.398e-20
Identity = 69/176 (39.20%), Postives = 88/176 (50.00%), Query Frame = 2
Query:    2 PMTWYPQDYI-KVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLXXXXXXXXXXXXXQ-NKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCET------RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDG 505
            PMTWYPQ Y+ KVPMT M MRP   SG PGRTYRFY G+ V+ FG GL                 L L ++   +  E Q      S+  +G   CE         F V I V+N G+  G H V LF  P    +G P K LVGF+ + L  +E+A + F++  C+ LS   E G
Sbjct:  593 PMTWYPQSYVEKVPMTIMNMRPDKASGYPGRTYRFYTGETVYAFGDGLSYTKFSHTLVKAPSLVSLGLEENHVCRSSECQ------SLDAIGPH-CENAVSGGGSAFEVHIKVRNGGDREGIHTVFLFTTPPAI-HGSPRKHLVGFEKIRLGKREEAVVRFKVEICKDLSVVDEIG 760          
BLAST of CX288584 vs. ExPASy Swiss-Prot
Match: BXL1_ARATH (Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.499e-17
Identity = 65/174 (37.36%), Postives = 84/174 (48.28%), Query Frame = 2
Query:    2 PMTWYPQDYI-KVPMTDMKMRPQATSGN-PGRTYRFYEGKEVFPFGCGL--XXXXXXXXXXXXXQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRG-NGRPI-KQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDG 505
            PMTWYPQDY+ KVPMT M MR    SGN PGRTYRFY+G  VFPFG GL               Q  + L+  +S   + N       S+    T      K  + + V N GE  G H V +F +P   G  G  + KQL+ F+ V + A  K  +  ++  C+ L    E G
Sbjct:  581 PMTWYPQDYVAKVPMTVMAMR---ASGNYPGRTYRFYKGPVVFPFGFGLSYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSS---SHSIKVSHTNCNSFPKMPLHVEVSNTGEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDEYG 748          
BLAST of CX288584 vs. ExPASy Swiss-Prot
Match: BXL2_ARATH (Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.181e-17
Identity = 59/168 (35.12%), Postives = 81/168 (48.21%), Query Frame = 2
Query:    2 PMTWYPQDYI-KVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLXXXXXXXXXXXXXQNKLYLNQSSSTKMVE-----NQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLS 487
            PMTWYPQDY+  +PMT+M MRP  +   PGRTYRFY+G  V+PFG GL               +   N + + K++          V  KS+  +    C+     V + V N G   G H +L+F  P   G   P KQLV F+ V +   EK  +   +  C+ LS
Sbjct:  577 PMTWYPQDYLTNLPMTEMSMRPVHSKRIPGRTYRFYDGPVVYPFGHGL------------SYTRFTHNIADAPKVIPIAVRGRNGTVSGKSI-RVTHARCDRLSLGVHVEVTNVGSRDGTHTMLVFSAPP-GGEWAPKKQLVAFERVHVAVGEKKRVQVNIHVCKYLS 730          
BLAST of CX288584 vs. ExPASy Swiss-Prot
Match: XYNB_PRUPE (Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.600e-16
Identity = 58/163 (35.58%), Postives = 76/163 (46.63%), Query Frame = 2
Query:    2 PMTWYPQDYIK-VPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLXXXXXXXXXXXXXQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLS 487
            PMTWYPQ+Y+  +PMTDM MR     G PGRTYRFY G  VFPFG GL                L     +S K   N  ++  K+V     +        V + VKN G M G H +L+F  P   G     KQL+GF  + +    +  +   +  C+ LS
Sbjct:  266 PMTWYPQNYVTHLPMTDMAMRADPARGYPGRTYRFYIGPVVFPFGLGLSYTTFAHNLAHGPT--LVSVPLTSLKATANSTMLS-KTVRVSHPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSPP-DGKWASSKQLMGFHKIHIATGSEKRVRIAVHVCKHLS 424          
The following BLAST results are available for this feature:
BLAST of CX288584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BXL7_ARATH5.111e-3948.85Probable beta-D-xylosidase 7 OS=Arabidopsis thalia... [more]
BXL6_ARATH2.909e-2636.93Probable beta-D-xylosidase 6 OS=Arabidopsis thalia... [more]
BXL5_ARATH3.556e-2437.08Probable beta-D-xylosidase 5 OS=Arabidopsis thalia... [more]
BXL3_ARATH1.652e-2136.78Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL... [more]
BXL4_ARATH1.398e-2039.20Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL... [more]
BXL1_ARATH5.499e-1737.36Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL... [more]
BXL2_ARATH7.181e-1735.12Probable beta-D-xylosidase 2 OS=Arabidopsis thalia... [more]
XYNB_PRUPE1.600e-1635.58Putative beta-D-xylosidase (Fragment) OS=Prunus pe... [more]
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Properties
Property NameValue
Genbank descriptionC02002A10SK IF1 Citrus clementina cDNA clone C02002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288584 ID=CX288584; Name=CX288584; organism=Citrus clementina; type=EST; length=517bp
ACCGATGACTTGGTATCCACAAGATTATATAAAAGTACCAATGACGGACA
TGAAAATGCGACCTCAAGCAACTTCAGGTAATCCAGGACGTACATATCGA
TTCTACGAAGGGAAAGAGGTCTTCCCATTCGGTTGTGGTCTCAGCTATTC
AAAGTATTCCTACAAGTTCAAATCTGTCAGCCAAAACAAGCTTTATTTAA
ATCAGTCATCATCTACAAAGATGGTTGAAAATCAAGATGTAGTCCATTAC
AAGTCTGTTCCAGAGTTGGGCACAGAATTTTGTGAGACAAGGAAGTTCTT
GGTTACCATCGGAGTTAAAAATCATGGAGAGATGGCGGGTAAGCACCCGG
TGTTGCTGTTTGTGAAGCCTGCAAGGCGTGGAAATGGGAGGCCAATAAAG
CAGTTGGTTGGATTCCAAAGTGTGATTCTAAATGCCAAAGAAAAAGCTGA
AATTGTTTTTGAGCTTAGCCCCTGTGAAAGCCTCAGCAGAGCTAGGGAAG
ATGGCTTGATGGTGATA
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