CX288585

Overview
NameCX288585
Unique NameCX288585
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.588e-53
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKTAEAVDILKLMSSTYL+ALCQA+DLRH EENL++
Sbjct:  425 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTYLVALCQAVDLRHFEENLRN 532          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.588e-53
Identity = 100/107 (93.46%), Postives = 106/107 (99.07%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKTAEAVDILKLMS+TYL+ALCQA+DLRHLEENLK
Sbjct:  418 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAVDLRHLEENLK 524          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.686e-53
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKTAEAV+ILKLMSST+L+ LCQAIDLRHLEENLKS
Sbjct:  331 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLVGLCQAIDLRHLEENLKS 438          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.686e-53
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVND+Y+NGLPSNL+ GRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYL+ALCQAIDLRHLEENLKS
Sbjct:  434 FSELVNDYYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKS 541          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.686e-53
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVND+Y+NGLPSNL+ GRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYL+ALCQAIDLRHLEENLKS
Sbjct:  431 FSELVNDYYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKS 538          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.120e-53
Identity = 100/108 (92.59%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKTAEAVDILKLMSST+L+ALCQAIDLRHLEENL++
Sbjct:  428 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLRN 535          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.044e-52
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSG RNP LDYGFKGAEIAMA+YCSELQFLANPVTNHV+SAEQHNQDVNSLGLIS+RKTAEAVDILKLMS+TYL+ALCQAIDLRHLEENLKS
Sbjct:  127 FSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVESAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKS 234          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.781e-52
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMA+YCSELQFL NPVTNHVQSAEQHNQDVNSLGLIS+RKTAEA+DILKLMSST+LIALCQA+DLRH+EEN+KS
Sbjct:  424 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAVDLRHIEENVKS 531          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.326e-52
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMA+YCSELQFL NPVTNHVQSAEQHNQDVNSLGLIS+RKTAEA+DILKLMSST+L+ALCQAIDLRHLEEN+K+
Sbjct:  411 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENVKN 518          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.326e-52
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVND+Y+NGLPSNL+ GRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTA+AVDILK+MSSTYL+ALCQAIDLRHLEENLKS
Sbjct:  415 FSELVNDYYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAKAVDILKIMSSTYLVALCQAIDLRHLEENLKS 522          
The following BLAST results are available for this feature:
BLAST of CX288585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PALY_CAMSI3.588e-5392.59Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PAL4_ARATH3.588e-5393.46Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PALY_PERAE4.686e-5393.52Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL2_SOLTU4.686e-5393.52Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]
PAL1_SOLTU4.686e-5393.52Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PAL1_PRUAV6.120e-5392.59Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PALY_VITVI1.044e-5292.59Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PAL2_ORYSI1.781e-5290.74Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_WHEAT2.326e-5290.74Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL1_SOLLC2.326e-5291.67Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionC02002A11SK IF1 Citrus clementina cDNA clone C02002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288585 ID=CX288585; Name=CX288585; organism=Citrus clementina; type=EST; length=327bp
ATTTTCTGAGCTGGTTAATGATTTTTACAGTAATGGGTTGCCTTCAAATC
TGTCTGGTGGTAGGAATCCATGCTTGGATTATGGGTTCAAAGGTGCCGAA
ATAGCAATGGCTGCGTATTGTTCCGAGCTCCAGTTTCTAGCCAATCCTGT
GACTAATCACGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTT
TAGGGCTGATCTCTGCCAGAAAAACAGCTGAAGCTGTTGATATCTTGAAG
CTCATGTCCTCAACTTACTTGATTGCACTCTGCCAAGCTATAGACTTGAG
GCACTTGGAGGAGAATCTGAAGAGCAC
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