CX288587

Overview
NameCX288587
Unique NameCX288587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288587_ssr32 microsatellite CX288587_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig135 contig Ccv1_Contig135:1..414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLC1_SOLTU (Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 3.546e-61
Identity = 119/137 (86.86%), Postives = 122/137 (89.05%), Query Frame = 2
Query:    2 NNNVELPTRSXXXXXXXXMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGM 412
            N NV LPTRS        M TMESLKFLVSS+YIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQ+IFDK+GWG AAKITPTVLLLTGVGFFSLLLFG PL P LAKFGM
Sbjct:  333 NRNVALPTRSKKKKVKPNMTTMESLKFLVSSKYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQWIFDKYGWGAAAKITPTVLLLTGVGFFSLLLFGAPLAPTLAKFGM 469          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLC1_ARATH (ADP,ATP carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=AATP1 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 2.379e-57
Identity = 110/137 (80.29%), Postives = 118/137 (86.13%), Query Frame = 2
Query:    2 NNNVELPTRSXXXXXXXXMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGM 412
            N  V LPTRS        MGTMESLKFLVSS YIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYS+FMGDFST TG+ATFTMMLLSQ++F+K+GWGVAAKITPTVLLLTGV FFSL+LFG P  P +AK GM
Sbjct:  335 NRYVPLPTRSKNKKEKPKMGTMESLKFLVSSPYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTCTGVATFTMMLLSQYVFNKYGWGVAAKITPTVLLLTGVAFFSLILFGGPFAPLVAKLGM 471          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLC2_ARATH (ADP,ATP carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=AATP2 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 3.107e-57
Identity = 111/137 (81.02%), Postives = 117/137 (85.40%), Query Frame = 2
Query:    2 NNNVELPTRSXXXXXXXXMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGM 412
            N  V LPTRS        MGTMESLKFLVSS YIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYS+FMGDFST TGIATFTMMLLSQ++F K+GWGVAAKITPTVLLLTGV FFSL+LFG P  P +AK GM
Sbjct:  332 NRYVPLPTRSKKKKVKPQMGTMESLKFLVSSPYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTCTGIATFTMMLLSQYVFKKYGWGVAAKITPTVLLLTGVAFFSLILFGGPFAPLVAKLGM 468          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLC1_CHLTR (ADP,ATP carrier protein 1 OS=Chlamydia trachomatis GN=tlcA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.136e-25
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATG-IATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFG 409
            M   ES  +L+ S Y+  LA LV+ YGI INLVEVTWKS+LK QFP+PN+YS+FMG+FS  TG ++ F M+ +   +  +FGW   A +TP ++L+TG  FF+L++F D     +A  G
Sbjct:  270 MSMGESFSYLLRSPYMLLLALLVICYGICINLVEVTWKSQLKMQFPNPNDYSAFMGNFSFWTGVVSVFVMLFIGGNVIRRFGWLTGALVTPIMVLVTGAVFFALVIFRDHATGLVAALG 388          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLC1_CHLMU (ADP,ATP carrier protein 1 OS=Chlamydia muridarum GN=tlcA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.136e-25
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATG-IATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFG 409
            M   ES  +L+ S Y+  LA LV+ YG+ INLVEVTWKS+LK QFP+PNEYS+FMG FS  TG ++ F M+ +   +  +FGW   A +TP ++L+TG  FF+L++F D     +A  G
Sbjct:  270 MSMGESFSYLLRSPYMLLLALLVICYGVCINLVEVTWKSQLKMQFPNPNEYSAFMGTFSFWTGVVSVFVMLFIGGNVIRRFGWLTGALVTPVMVLVTGAIFFALVIFRDHATGLVAALG 388          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLC1_CHLPN (ADP,ATP carrier protein 1 OS=Chlamydia pneumoniae GN=tlcA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.985e-25
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMML-LSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFG 409
            M   +S  +L  S YI  LA LV+AYGI INL+EVTWKS+LK Q+P+ N+YS FMG+FS  TG+ +  +ML +   +  KFGW   A +TP ++LLTG+ FF+L++F +     +A FG
Sbjct:  272 MNMKDSFLYLARSPYILLLALLVIAYGICINLIEVTWKSQLKLQYPNMNDYSEFMGNFSFWTGVVSVLIMLFVGGNVIRKFGWLTGALVTPVMVLLTGIVFFALVIFRNQASGLVAMFG 390          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCC_RICBR (ADP,ATP carrier protein 3 OS=Rickettsia bellii (strain RML369-C) GN=tlcC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.780e-20
Identity = 43/119 (36.13%), Postives = 74/119 (62.18%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGM 412
            +  +ES+K +++S+YI  +A L++ YG+ IN+VE  WK+K+K  +PS  +Y  FMG F+   GI+  T M++   I  + GW  +A +TP +L +TG+ FF  ++F + +G     F +
Sbjct:  278 LSVLESIKLVINSKYIGRIALLIICYGLLINIVEGPWKAKVKELYPSTIDYVHFMGRFNILMGISCVTFMIIGSNILRRLGWFFSALLTPIMLSITGLMFFIFIIFIEEIGSCFGNFNL 396          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCA_RICBR (ADP,ATP carrier protein 1 OS=Rickettsia bellii (strain RML369-C) GN=tlcA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.766e-20
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLF 373
            M  +ES K + +S+Y+  +A L++AYGIS+NLVE  WKSKLK   P+   Y+ +MG F    G      M++   I  K  W  AA ITP ++L+TG+ FF+ + F
Sbjct:  265 MSLIESFKMIFTSKYVGYIALLLIAYGISVNLVEGVWKSKLKELHPTKEAYTMYMGQFQAYQGWVAIAFMIIGSNILRKVSWLTAAMITPLMMLITGIAFFAFIFF 370          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCC_RICFE (ADP,ATP carrier protein 3 OS=Rickettsia felis GN=tlcC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.836e-20
Identity = 44/132 (33.33%), Postives = 77/132 (58.33%), Query Frame = 2
Query:   17 LPTRSXXXXXXXXMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGM 412
            L T+         +  +ES+K ++ S+YI  +A L++ YG+ IN+VE  WK+K+K   P+  +Y +FMG F+   GI+  T M++   I  + GW ++A +TP +L +TG+ FF  ++F + +G     F +
Sbjct:  262 LDTKKVTVKTKTKLSVIESIKLVIHSKYIGRIALLIICYGLLINIVEGPWKAKIKELHPNTIDYFNFMGRFNIWMGISCVTFMVIGSNILRRLGWLISALLTPIMLSITGLMFFIFIIFIEEIGACFGDFNL 393          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCC_RICCN (ADP,ATP carrier protein 3 OS=Rickettsia conorii GN=tlcC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.154e-19
Identity = 42/119 (35.29%), Postives = 74/119 (62.18%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGM 412
            +  +ES+K ++ S+YI  +A L++ YG+ IN+VE  WK+K+K   P+  +Y +FMG F+   GI+  T M++   I  + GW ++A +TP +L +TG+ FF  ++F + +G     F +
Sbjct:  275 LSVIESIKLVIHSKYIGRIALLIICYGLLINIVEGPWKAKIKELHPNTIDYVNFMGRFNIWMGISCVTFMIIGSNILRRLGWLISALLTPIMLSITGLMFFIFIIFIEEIGECFGDFNL 393          
The following BLAST results are available for this feature:
BLAST of CX288587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLC1_SOLTU3.546e-6186.86Plastidic ATP/ADP-transporter OS=Solanum tuberosum... [more]
TLC1_ARATH2.379e-5780.29ADP,ATP carrier protein 1, chloroplastic OS=Arabid... [more]
TLC2_ARATH3.107e-5781.02ADP,ATP carrier protein 2, chloroplastic OS=Arabid... [more]
TLC1_CHLTR3.136e-2547.90ADP,ATP carrier protein 1 OS=Chlamydia trachomatis... [more]
TLC1_CHLMU3.136e-2547.90ADP,ATP carrier protein 1 OS=Chlamydia muridarum G... [more]
TLC1_CHLPN6.985e-2547.90ADP,ATP carrier protein 1 OS=Chlamydia pneumoniae ... [more]
TLCC_RICBR1.780e-2036.13ADP,ATP carrier protein 3 OS=Rickettsia bellii (st... [more]
TLCA_RICBR6.766e-2041.51ADP,ATP carrier protein 1 OS=Rickettsia bellii (st... [more]
TLCC_RICFE8.836e-2033.33ADP,ATP carrier protein 3 OS=Rickettsia felis GN=t... [more]
TLCC_RICCN1.154e-1935.29ADP,ATP carrier protein 3 OS=Rickettsia conorii GN... [more]

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Properties
Property NameValue
Genbank descriptionC02002B01SK IF1 Citrus clementina cDNA clone C02002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288587 ID=CX288587; Name=CX288587; organism=Citrus clementina; type=EST; length=414bp
GAACAATAATGTTGAACTTCCTACCCGTAGTAAGAAGAAGAAGGAGAAGC
CAAAGATGGGAACAATGGAGAGCTTGAAATTCTTGGTGTCTTCAAGATAC
ATTAGGGATCTTGCTACTTTAGTGGTTGCATATGGTATCAGTATTAATCT
AGTTGAGGTTACATGGAAATCGAAGCTCAAGGCTCAGTTCCCAAGTCCGA
ATGAGTATTCTTCCTTTATGGGAGACTTCTCAACAGCTACTGGAATAGCA
ACATTCACGATGATGCTTCTAAGTCAATTTATATTTGATAAATTTGGATG
GGGAGTTGCTGCAAAGATCACACCCACAGTCCTCCTGCTTACAGGAGTTG
GTTTCTTTTCTCTACTATTATTTGGGGATCCTCTGGGACCTGCTCTTGCG
AAGTTCGGAATGAC
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