CX288594

Overview
NameCX288594
Unique NameCX288594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C97B2_SOYBN (Cytochrome P450 97B2 OS=Glycine max GN=CYP97B2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 85/208 (40.87%), Postives = 123/208 (59.13%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYK-------VNAGQDIMISVYNIHHSSQVWERAEEFLPERF-------DLEG------------PMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELV-PDQNINMTTGATIHTTNGLYMK 544
            VLTW ++LL+++ + + KAQ E+D VL     +FE +K+L+++   + E++RLYP PP+LIRR+   DVLPG +K       + AG D+ ISVYN+H S   W+R ++F PERF       ++EG              PNE  +DF F+PF GGPRKCVGDQF             QN + EL    +++ + TGATIHT NG++ +
Sbjct:  361 VLTWAVFLLAQNPSKMKKAQAEVDLVLGTGRPTFESLKELQYIRLIVVEALRLYPQPPLLIRRSLKSDVLPGGHKGEKDGYAIPAGTDVFISVYNLHRSPYFWDRPDDFEPERFLVQNKNEEIEGWAGLDPSRSPGALYPNEVISDFAFLPFGGGPRKCVGDQFALMESTVALTMLLQNFDVELKGTPESVELVTGATIHTKNGMWCR 568          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C97B3_ARATH (Cytochrome P450 97B3 OS=Arabidopsis thaliana GN=CYP97B3 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.757e-33
Identity = 80/208 (38.46%), Postives = 111/208 (53.37%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPG-------NYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERF-------DLEG------------PMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFEL-VPDQNINMTTGATIHTTNGLYMK 544
            VLTW ++LLS++   + KAQ EID VL     ++E +K L+++   + E +RL+P PP+LIRR    + LPG        +KV  G DI ISVYN+H S   W+   +F PERF        +EG              PNE   DF F+PF GGPRKC+GDQF             Q  + EL    +++ + +GATIH  NG++ K
Sbjct:  367 VLTWAVFLLSQNPEKIRKAQAEIDAVLGQGPPTYESMKKLEYIRLIVVEVLRLFPQPPLLIRRTLKPETLPGGHKGEKEGHKVPKGTDIFISVYNLHRSPYFWDNPHDFEPERFLRTKESNGIEGWAGFDPSRSPGALYPNEIIADFAFLPFGGGPRKCIGDQFALMESTVALAMLFQKFDVELRGTPESVELVSGATIHAKNGMWCK 574          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C97B1_PEA (Cytochrome P450 97B1 OS=Pisum sativum GN=CYP97B1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.513e-31
Identity = 72/164 (43.90%), Postives = 100/164 (60.98%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYK-------VNAGQDIMISVYNIHHSSQVWERAEEFLPERF-------DLEG------------PMPNETNTDFRFIPFSGGPRKCVGDQF 415
            VLTW ++LL+++ + + KAQ E+D VL     +FE +K L+++   + E++RLYP PP+LIRR+   DVLPG +K       + AG D+ ISVYN+H S   W+R  +F PERF       ++EG              PNE  +DF F+PF GGPRKCVGDQF
Sbjct:  370 VLTWAVFLLAQNPDKMKKAQAEVDLVLGMGKPTFELLKKLEYIRLIVVETLRLYPQPPLLIRRSLKPDVLPGGHKGDKDGYTIPAGTDVFISVYNLHRSPYFWDRPNDFEPERFLVQNNNEEVEGWAGFDPSRSPGALYPNEIISDFAFLPFGGGPRKCVGDQF 533          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4AP_PIG (Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 59/183 (32.24%), Postives = 89/183 (48.63%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTT--GATIHTTNGLYMK 544
            ++W LY L+       + +EEI  +L  G S +++ +  + + T CI E++RLYP  P + R        P    + AG  + +SVY++HH+ QVW   EEF P RF      P        F+PFSGG R C+G QF               + FEL PD +   T      +H+ NG+++K
Sbjct:  324 ISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPGVSRELSKPITFPDGRSLPAGIILSLSVYSLHHNPQVWPNPEEFDPSRF-----APGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTL--LRFELAPDPSRKPTVIPEVVLHSKNGIHLK 499          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4AO_PIG (Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 57/183 (31.15%), Postives = 88/183 (48.09%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNIN--MTTGATIHTTNGLYMK 544
            ++W LY L+       + +EEI  +L  G S +++ +  + + T CI E++RLYP  P + R        P    + AG  + +S+Y +HH+ QVW   EEF P RF      P        F+PFSGG R C+G QF               + FEL PD +     T    +++ NG+++K
Sbjct:  324 ISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPGVSRELSKPITFPDGRSLPAGITLSLSIYGLHHNPQVWPNPEEFDPSRF-----APGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTL--LRFELAPDPSRKPIATPEVVLNSKNGIHLK 499          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F5_RAT (Cytochrome P450 4F5 OS=Rattus norvegicus GN=Cyp4f5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 53/140 (37.86%), Postives = 76/140 (54.29%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L++      + ++E+  +L+ R      ++D+  L FLT CI ES+RL+P    L+RR   D VLP    +  G   +IS++ IHH+  VW   E F P RFD E     +  +   FIPFS GPR C+G  F
Sbjct:  339 LSWILYNLARHPEYQERCRQEVWELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPAIDLLRRCTQDIVLPDGRVIPKGNICVISIFGIHHNPSVWPDPEVFDPFRFDSEN---RQKRSPLSFIPFSAGPRNCIGQTF 475          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 56/182 (30.77%), Postives = 87/182 (47.80%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMT--TGATIHTTNGLYM 541
            ++W LY L+ +     + +EEI  +L  G S +++ +  + + T CI E++RLYP  P + R        P    + AG  + +S+Y +HH+ QVW   EEF P RF      P        F+PFSGG R C+G QF               + FEL PD +       G  + + NG+++
Sbjct:  324 ISWVLYALASNPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPEEFDPSRF-----APGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVVVALTL--LRFELAPDPSRIPVPIQGIVLKSKNGIHL 498          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F6_RAT (Cytochrome P450 4F6 OS=Rattus norvegicus GN=Cyp4f6 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLI--RRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L++      + ++E+  +L+ R      ++D+  L FLT CI ES+RL  HPPVL+  R    D VLP    +  G   +IS++ +HH+  VW   E + P RFD E P   +  +   FIPFS GPR C+G  F
Sbjct:  337 LSWILYNLARHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRL--HPPVLLISRCCSQDIVLPDGRVIPKGNICVISIFGVHHNPSVWPDPEVYNPFRFDPENP---QKRSPLAFIPFSAGPRNCIGQTF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CPXB_BACME (Bifunctional P-450/NADPH-P450 reductase OS=Bacillus megaterium GN=CYP102A1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVW-ERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFE 472
            +L++ LY L K+ + L KA EE  RVL     S++ +K LK++   +NE++RL+P  P     A+ D VL G Y +  G ++M+ +  +H    +W +  EEF PERF+    +P        F PF  G R C+G QF             ++ +FE
Sbjct:  273 LLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHA-----FKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFE 425          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4FN_HUMAN (Cytochrome P450 4F22 OS=Homo sapiens GN=CYP4F22 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 52/183 (28.42%), Postives = 86/183 (46.99%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTGATIHTTNGLYMK 544
            ++W L+ L+K      K +EEI  V++GR      ++D+  L F T CI ES+R YP   ++ R+   D  LP    +  G   ++S+Y  HH+  VW  ++ + P RFD + P   +  +   ++PFS GPR C+G  F                   +   + +       + T NGL++K
Sbjct:  344 ISWMLFNLAKYPEYQEKCREEIQEVMKGRELEELEWDDLTQLPFTTMCIKESLRQYPPVTLVSRQCTEDIKLPDGRIIPKGIICLVSIYGTHHNPTVWPDSKVYNPYRFDPDNP---QQRSPLAYVPFSAGPRNCIGQSFAMAELRVVVALTLLRFRLSVDRTRKVRRKPELILRTENGLWLK 523          
The following BLAST results are available for this feature:
BLAST of CX288594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
C97B2_SOYBN5.736e-3940.87Cytochrome P450 97B2 OS=Glycine max GN=CYP97B2 PE=... [more]
C97B3_ARATH2.757e-3338.46Cytochrome P450 97B3 OS=Arabidopsis thaliana GN=CY... [more]
C97B1_PEA1.513e-3143.90Cytochrome P450 97B1 OS=Pisum sativum GN=CYP97B1 P... [more]
CP4AP_PIG6.372e-2232.24Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2... [more]
CP4AO_PIG4.130e-2131.15Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2... [more]
CP4F5_RAT4.566e-2037.86Cytochrome P450 4F5 OS=Rattus norvegicus GN=Cyp4f5... [more]
CP4AL_PIG4.566e-2030.77Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
CP4F6_RAT7.789e-2038.03Cytochrome P450 4F6 OS=Rattus norvegicus GN=Cyp4f6... [more]
CPXB_BACME1.329e-1932.91Bifunctional P-450/NADPH-P450 reductase OS=Bacillu... [more]
CP4FN_HUMAN1.735e-1928.42Cytochrome P450 4F22 OS=Homo sapiens GN=CYP4F22 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02002B08SK IF1 Citrus clementina cDNA clone C02002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288594 ID=CX288594; Name=CX288594; organism=Citrus clementina; type=EST; length=544bp
AGTTTTGACCTGGACACTATATCTTCTAAGCAAGGATTGTAACTCATTGA
TGAAAGCACAAGAAGAGATTGATAGAGTATTGCAGGGAAGATCTGCATCC
TTTGAAGACATAAAAGATCTGAAATTCCTAACACGTTGCATAAATGAGTC
AATGCGTCTCTACCCACATCCTCCTGTCTTGATAAGAAGAGCTCAAGTAG
ATGATGTGCTCCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATAATG
ATTTCAGTTTACAATATCCACCATTCCTCACAGGTCTGGGAGAGAGCAGA
AGAGTTTTTACCAGAAAGGTTTGACTTGGAAGGCCCCATGCCCAATGAAA
CAAATACAGATTTTAGATTCATTCCTTTCAGCGGAGGGCCTCGGAAGTGT
GTTGGAGATCAGTTTGCTCTGCTAGAGGCTATTGTTGCTCTAGCAATACT
CTTGCAGAATATGAACTTTGAACTAGTTCCTGATCAGAATATCAACATGA
CTACTGGAGCAACCATACACACAACGAATGGTTTATACATGAAA
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