CX288596

Overview
NameCX288596
Unique NameCX288596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288596 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 52/159 (32.70%), Postives = 72/159 (45.28%), Query Frame = -2 
Query:    2 INPVDCMHYIHLDENAKSTREIQRRLNPNMKEVVRTEVLKLLDACIIYPIXDSSWVSPVQVVSKKSGITVVTNVDNELIPTRVTTG*HVCIDYRKLNSVARKDHFPLPFIDQMXDRLADHEFYCXLDGYSGYNQIPIAPKDQEKTTFTCPFDTFAYRRM 478
            IN +   H I +   A+  R     +    ++ +   V KLLD   I P   S   SPV +V KK G                     +C+DYR LN     D FPLP ID +  R+ + + +  LD +SGY+QIP+ PKD+ KT F  P   + Y  M
Sbjct:  605 INNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVP-SKSPCSSPVVLVPKKDGTF------------------RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 744
[Close]
BLAST of CX288596 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 52/159 (32.70%), Postives = 72/159 (45.28%), Query Frame = -2 
Query:    2 INPVDCMHYIHLDENAKSTREIQRRLNPNMKEVVRTEVLKLLDACIIYPIXDSSWVSPVQVVSKKSGITVVTNVDNELIPTRVTTG*HVCIDYRKLNSVARKDHFPLPFIDQMXDRLADHEFYCXLDGYSGYNQIPIAPKDQEKTTFTCPFDTFAYRRM 478
            IN +   H I +   A+  R     +    ++ +   V KLLD   I P   S   SPV +V KK G                     +C+DYR LN     D FPLP ID +  R+ + + +  LD +SGY+QIP+ PKD+ KT F  P   + Y  M
Sbjct:  579 INNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVP-SKSPCSSPVVLVPKKDGTF------------------RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 718
The following BLAST results are available for this feature:
BLAST of CX288596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YI31B_YEAST1.202e-1432.70Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST1.202e-1432.70Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionC02002B10SK IF1 Citrus clementina cDNA clone C02002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288596 ID=CX288596; Name=CX288596; organism=Citrus clementina; type=EST; length=596bp
GCATCCTCCTATATGCAAAAGTGTCAAAAGGGCAAGTGAAAGTGGTTTTC
TCTTGATCTTTCGGTGCTATGGGAATCTGATTATATCCTGAGTAGCCATC
TAGAANACAATAAAATTCATGATCTGCTAATCTATCANGCATTTGATCAA
TAAATGGTAAAGGAAAATGGTCTTTACGTGCGACAGAATTCAACTTTCTA
TAATCAATGCATACATGTCATCCTGTAGTCACTCTAGTGGGTATCAATTC
ATTATCGACATTCGTAACTACTGTGATTCCTGACTTTTTAGAGACAACTT
GTACAGGACTGACCCATGAACTATCANAAATTGGGTAAATGATACATGCG
TCTAATAGCTTAAGGACTTCAGTTCTAACAACTTCTTTCATATTAGGATT
TAACCGACGTTGTATTTCCCTAGTAGATTTAGCATTTTCATCAAGGTGAA
TGTAATGCATGCAGTCTACTGGGTTTATACCTTTAATGTCTGCTATGGTC
TATCCTAATGCTCCTTTGTGCTCTTTTAAAATATCCAACAACTTACCTTT
TTGTTCGTCATTTAAGGATGATGAGATGATTACCAGTAGAGTACTT
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