CX288599

Overview
NameCX288599
Unique NameCX288599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288599_ssr1 microsatellite CX288599_ssr1:1..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig136 contig Ccv1_Contig136:1..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.934e-67
Identity = 122/152 (80.26%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVKAVAVLG +EGVKGT+ F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAG EHG PEDE RHA            T    +VD+QIPLSG NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.832e-67
Identity = 121/152 (79.61%), Postives = 130/152 (85.53%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVKAVAVLG +EGVKGT+ F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHG PEDENRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.115e-66
Identity = 117/152 (76.97%), Postives = 130/152 (85.53%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVKAV VL  +EGV GTV F+QEG GPTTV+G++SGL+PG HGFHVHALGDTTNGCMSTGPHFNPAGKEHG PEDE RHA            TATFT++D+QIPL+GPNSI+GRAVVVHADPDDLG+GGHELSK TGNAGGRVACG+IGLQG
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.244e-66
Identity = 118/152 (77.63%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVK VAVL  +EGV GT+ F+QEGDGPTTV+G++SGLKPGPHGFHVHALGDTTNGC+STGPHFNPAGKEHG P+DE RHA            TA FT+VD QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSKTTGN GGRVACGI GLQG
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 3.244e-66
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVKAVAVLG ++GVKGT+ F+QEGDGPT V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHG PEDENRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 5.534e-66
Identity = 118/152 (77.63%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVKAVAVL  +EGV GT+ FSQEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHG P D+NRHA            TA+FT+ D QIPL+G NS+IGRAVVVH DPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 7.228e-66
Identity = 120/152 (78.95%), Postives = 128/152 (84.21%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 7.228e-66
Identity = 120/152 (78.95%), Postives = 128/152 (84.21%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.610e-65
Identity = 117/152 (76.97%), Postives = 130/152 (85.53%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            M KAV VL  +EGV GTV F+QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NP GKEHG PED+ RHA            TATFT++D+QIPLSGPNSI+GRAVVVHA+PDDLG+GGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.103e-65
Identity = 118/152 (77.63%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 544
            MVKAVAVL  +EGV GT+ F+Q+GD PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
The following BLAST results are available for this feature:
BLAST of CX288599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_ANACO2.934e-6780.26Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC4_MAIZE3.832e-6779.61Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC1_MESCR1.115e-6676.97Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_PAUKA3.244e-6677.63Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC5_MAIZE3.244e-6678.29Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_IPOBA5.534e-6677.63Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC1_ORYSJ7.228e-6678.95Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI7.228e-6678.95Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_SPIOL1.610e-6576.97Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_NICPL2.103e-6577.63Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]

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Properties
Property NameValue
Genbank descriptionC02002C02SK IF1 Citrus clementina cDNA clone C02002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288599 ID=CX288599; Name=CX288599; organism=Citrus clementina; type=EST; length=620bp
TCTCTCTCTCTCTCTCACTCCCTCTTTCTCTCTACAAGCCCTCTTCATTT
TCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAGCA
GTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTTTC
CCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCTCA
AGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAAAT
GGTTGCATGTCTACCGGACCCCACTTTAACCCTGCTGGAAAAGAACATGG
ACCTCCAGAGGATGAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATG
TTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTCCT
CTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGA
TCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAA
ATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGC
CGCATCTCATCGGACAATAATAAATTCATTTGATATGATGTTTTGAGTGC
ATTATAGTCCATATATGCTT
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