CX288606

Overview
NameCX288606
Unique NameCX288606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288606 vs. ExPASy Swiss-Prot
Match: VPS33_ARATH (Vacuolar protein sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 79/125 (63.20%), Postives = 92/125 (73.60%), Query Frame = 3
Query:    3 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSXGLSSSIDKVGDGRRSXXXXXXXXXXXXAEISALRFLSAQEGMAYDVIVGTTNIISGNSLAETFSENLG 377
            DI+YV+SGYAPLSIRL+Q AI SGWRPME+ILKLLPGPH ETKR GF SSPS D   G S+    V DGRRS            AEISALR+L+++EGMAYD+IV TT I++G +L ETF E LG
Sbjct:  471 DIAYVYSGYAPLSIRLIQQAIHSGWRPMEDILKLLPGPHLETKRSGFPSSPSVDSLHGASNG---VADGRRSIVLVVFIGGVTFAEISALRYLASKEGMAYDLIVATTKIVNGATLIETFMEKLG 592          
BLAST of CX288606 vs. ExPASy Swiss-Prot
Match: VP33A_MOUSE (Vacuolar protein sorting-associated protein 33A OS=Mus musculus GN=Vps33a PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.336e-16
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSXGLSSSIDKVGDGRRSXXXXXXXXXXXXAEISALRFLSAQEGMAYDVIVGTTNIISGNSLAETFSE 368
            DISYV+SGYAPLS+RL Q   R GWR +EE+L++LPGPH+E ++          +  GL     K   G               AEI+ALRFLS  E    + ++ TT +++GNS  E   E
Sbjct:  486 DISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQ---------PLPTGLQK---KRQPGENRVTLVFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGNSWIEALME 595          
BLAST of CX288606 vs. ExPASy Swiss-Prot
Match: VP33A_RAT (Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus GN=Vps33a PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSXGLSSSIDKVGDGRRSXXXXXXXXXXXXAEISALRFLSAQEGMAYDVIVGTTNIISGNSLAETFSE 368
            DISYV+SGYAPLS+RL Q   R GWR +EE+L++LPGPH+E ++          +  G+     K   G               AEI+ALRFLS  E    + ++ TT +I+G+S  E   E
Sbjct:  485 DISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQ---------PLPTGVQK---KRQPGENRVTLVFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLINGSSWLEALME 594          
BLAST of CX288606 vs. ExPASy Swiss-Prot
Match: VP33A_HUMAN (Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3
Query:    3 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSXGLSSSIDKVGDGRRSXXXXXXXXXXXXAEISALRFLSAQEGMAYDVIVGTTNIISGNSLAETFSE 368
            DISYV+SGYAPLS+RL Q   R GWR +EE+L++LPGPH+E ++          +  GL     K   G               AEI+ALRFLS  E    + ++ TT +++G S  E   E
Sbjct:  484 DISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQ---------PLPTGLQK---KRQPGENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTSWIEALME 593          
The following BLAST results are available for this feature:
BLAST of CX288606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VPS33_ARATH6.814e-3763.20Vacuolar protein sorting-associated protein 33 hom... [more]
VP33A_MOUSE1.336e-1640.16Vacuolar protein sorting-associated protein 33A OS... [more]
VP33A_RAT5.077e-1639.34Vacuolar protein sorting-associated protein 33A OS... [more]
VP33A_HUMAN6.631e-1639.34Vacuolar protein sorting-associated protein 33A OS... [more]
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Properties
Property NameValue
Genbank descriptionC02002C10SK IF1 Citrus clementina cDNA clone C02002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288606 ID=CX288606; Name=CX288606; organism=Citrus clementina; type=EST; length=541bp
ACGATATCTCCTACGTCTTCTCCGGATATGCTCCTCTTAGTATCCGCCTT
GTTCAGAATGCCATTCGATCTGGATGGCGTCCCATGGAAGAAATTCTGAA
GCTGTTGCCCGGACCCCATTATGAAACAAAAAGAGGTGGGTTCTCAAGTA
GTCCATCATTTGACATGTCGCANGGGCTGTCCTCCTCCATCGACAAAGTT
GGTGATGGAAGGCGTTCCCTAGTACTTGTAGTCTTTGTTGGAGGGGTAAC
ATTTGCAGAAATTTCTGCTCTTCGATTTCTCAGTGCTCAGGAAGGGATGG
CATATGATGTGATAGTTGGGACCACGAACATCATTAGTGGTAATAGCTTG
GCTGAAACATTCTCGGAGAATTTGGGTTGACTTGTATAGCTCTTTTCAGT
CTAATATTTGAAACGACCAAATTTTATGTTTTCTTATTTGTATATACTGT
TTGTTGGGGATGTATTCTATATACGTTAGTGTCAGAAAGTGAGCCTTGTT
GATGTAGGATGGTTGGGTAGGATGAACAAGATACAATTCTG
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