CX288606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288606 vs. ExPASy Swiss-Prot
Match: VPS33_ARATH (Vacuolar protein sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37 Identity = 79/125 (63.20%), Postives = 92/125 (73.60%), Query Frame = 3 Query: 3 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSXGLSSSIDKVGDGRRSXXXXXXXXXXXXAEISALRFLSAQEGMAYDVIVGTTNIISGNSLAETFSENLG 377 DI+YV+SGYAPLSIRL+Q AI SGWRPME+ILKLLPGPH ETKR GF SSPS D G S+ V DGRRS AEISALR+L+++EGMAYD+IV TT I++G +L ETF E LG Sbjct: 471 DIAYVYSGYAPLSIRLIQQAIHSGWRPMEDILKLLPGPHLETKRSGFPSSPSVDSLHGASNG---VADGRRSIVLVVFIGGVTFAEISALRYLASKEGMAYDLIVATTKIVNGATLIETFMEKLG 592
BLAST of CX288606 vs. ExPASy Swiss-Prot
Match: VP33A_MOUSE (Vacuolar protein sorting-associated protein 33A OS=Mus musculus GN=Vps33a PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.336e-16 Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 3 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSXGLSSSIDKVGDGRRSXXXXXXXXXXXXAEISALRFLSAQEGMAYDVIVGTTNIISGNSLAETFSE 368 DISYV+SGYAPLS+RL Q R GWR +EE+L++LPGPH+E ++ + GL K G AEI+ALRFLS E + ++ TT +++GNS E E Sbjct: 486 DISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQ---------PLPTGLQK---KRQPGENRVTLVFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGNSWIEALME 595
BLAST of CX288606 vs. ExPASy Swiss-Prot
Match: VP33A_RAT (Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus GN=Vps33a PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 3 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSXGLSSSIDKVGDGRRSXXXXXXXXXXXXAEISALRFLSAQEGMAYDVIVGTTNIISGNSLAETFSE 368 DISYV+SGYAPLS+RL Q R GWR +EE+L++LPGPH+E ++ + G+ K G AEI+ALRFLS E + ++ TT +I+G+S E E Sbjct: 485 DISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQ---------PLPTGVQK---KRQPGENRVTLVFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLINGSSWLEALME 594
BLAST of CX288606 vs. ExPASy Swiss-Prot
Match: VP33A_HUMAN (Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 3 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSXGLSSSIDKVGDGRRSXXXXXXXXXXXXAEISALRFLSAQEGMAYDVIVGTTNIISGNSLAETFSE 368 DISYV+SGYAPLS+RL Q R GWR +EE+L++LPGPH+E ++ + GL K G AEI+ALRFLS E + ++ TT +++G S E E Sbjct: 484 DISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQ---------PLPTGLQK---KRQPGENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTSWIEALME 593 The following BLAST results are available for this feature:
BLAST of CX288606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288606 ID=CX288606; Name=CX288606; organism=Citrus clementina; type=EST; length=541bpback to top |