CX288609

Overview
NameCX288609
Unique NameCX288609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288609 vs. ExPASy Swiss-Prot
Match: HEBP2_HUMAN (Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:  169 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPP--AKGLHLQQWKPTYAAVRQFSGFVS 495
            +EIRHY  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q +PP      + ++        VR F GF S
Sbjct:   38 YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSS 147
[Close]
BLAST of CX288609 vs. ExPASy Swiss-Prot
Match: HEBP2_MOUSE (Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.283e-16
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:  169 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHLQQWKPTYAAVRQFSGFVS 495
            +EIRHY  + W+ST  ++ +    A +TGF +L  YIQGKNE E  I++TAPV + V P   PF ES+ T+S Y+P   Q +PP P++  + ++        VR F GF S
Sbjct:   38 YEIRHYGPAKWVSTC-VESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVFVRSFDGFSS 147
The following BLAST results are available for this feature:
BLAST of CX288609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HEBP2_HUMAN6.805e-1843.24Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE... [more]
HEBP2_MOUSE1.283e-1641.44Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE... [more]
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Properties
Property NameValue
Genbank descriptionC02002D02SK IF1 Citrus clementina cDNA clone C02002D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288609 ID=CX288609; Name=CX288609; organism=Citrus clementina; type=EST; length=527bp
ATTCGGCACGAGGGCTTGAGCATGTTAAAGTTTTCAGTTCTTCTCGGCCT
ACTCTCAAATCTGAACTTGGGTTTATGGCCTGAATCTTCAAAGGGGTTGA
AAATATTTCCACCAACATGCAACAGAATTGAGTGTCCAAGCTTTGAGACC
GTTCATGTTGGCAATGGCTTTGAAATTCGTCACTATAATTCGTCCATGTG
GATGTCTACTTCCCCTATTCAAGATATCTCTCTAGTTCAAGCTACCAGAA
CTGGCTTTCTCCAGCTATTTGATTACATTCAAGGAAAGAACGAATATGAG
CAAACAATAGAGATGACAGCTCCAGTAATCACTGAAGTTTTACCAAGTGA
TGGACCCTTCTGTGAATCTTCATTCACCGTTAGCTTTTACGTCCCAAAGG
TGAACCAAGCCAACCCACCTCCAGCAAAAGGCCTCCATCTCCAACAATGG
AAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTGTATCATACTC
GAACATTGGTGAAGAAGCTGCTGCATT
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