CX288611

Overview
NameCX288611
Unique NameCX288611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15024 contig Ccv1_Contig15024:214..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.623e-40
Identity = 78/97 (80.41%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INELI RMN
Sbjct:  146 ELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.345e-39
Identity = 75/97 (77.32%), Postives = 83/97 (85.57%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+EDLIHEI+TVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INEL+ RMN
Sbjct:  146 ELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.327e-38
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+EDLIHEI+TVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INEL+ RMN
Sbjct:  148 ELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.457e-33
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LI RMN
Sbjct:  151 ELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.457e-33
Identity = 68/97 (70.10%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LI RMN
Sbjct:  174 ELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.457e-33
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LI RMN
Sbjct:  151 ELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.457e-33
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LI RMN
Sbjct:  152 ELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.457e-33
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LI RMN
Sbjct:  152 ELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.209e-33
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LI RMN
Sbjct:  164 ELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.716e-32
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRGYGK+NKQR+ALTDNSIIE+ LG++GIICMEDLIHEI TVGP+FK+A+NFLWPF            +  H++EGGD GNRE++IN LI +MN
Sbjct:  151 ELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248          
The following BLAST results are available for this feature:
BLAST of CX288611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL72_ARATH4.623e-4080.4160S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH1.345e-3977.3260S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL74_ARATH4.327e-3874.2360S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_PONAB2.457e-3369.0760S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE2.457e-3370.1060S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA2.457e-3369.0760S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN2.457e-3369.0760S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN2.457e-3369.0760S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT3.209e-3369.0760S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_NEUCR2.716e-3266.3360S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC02002D04SK IF1 Citrus clementina cDNA clone C02002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288611 ID=CX288611; Name=CX288611; organism=Citrus clementina; type=EST; length=517bp
GAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGC
TTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCATGGAATTA
TCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTC
AAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCACCATTGGG
TGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATGCAGGAA
ACCGTGAAGATTACATCAATGAGCTCATCANAAGGATGAACTAGGCTTCT
GCAGAATATCCTACCCCTTTTGAAGAAGTTTTGATGTGATCAATATCTTA
AATTTTGGCTTTTAGTGTTTCCTATTATTCCCAGCCTTTTCCCTGGAAGT
TAAGTAGAAACTTTCTTACTTTTTATAACAGTGACAGTGTTGTTATTTTG
GCTTCAGACTGGATTATCATTCCAAATTTTATTTTTTGTTTTCATGTGTT
TTAGTTTCAGTTATGAA
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