CX288613

Overview
NameCX288613
Unique NameCX288613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig137 contig Ccv1_Contig137:1..485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.835e-36
Identity = 75/137 (54.74%), Postives = 101/137 (73.72%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED 485
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E+
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEE 137
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.835e-36
Identity = 75/137 (54.74%), Postives = 101/137 (73.72%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED 485
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E+
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEE 137
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.621e-36
Identity = 75/123 (60.98%), Postives = 97/123 (78.86%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQ 443
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF +Q
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQFPRQ 123
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L4_BOVIN (Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.621e-36
Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 470
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++ T  P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKTPKP 132
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L4_PONAB (Transcription factor BTF3 homolog 4 OS=Pongo abelii GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.896e-35
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 470
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKP 132
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L4_MOUSE (Transcription factor BTF3 homolog 4 OS=Mus musculus GN=Btf3l4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.896e-35
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 470
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKP 132
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.896e-35
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 470
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKP 132
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L4_CHICK (Transcription factor BTF3 homolog 4 OS=Gallus gallus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.782e-35
Identity = 73/123 (59.35%), Postives = 95/123 (77.24%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQ 443
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQ 123
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BTF3_MOUSE (Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.437e-34
Identity = 74/137 (54.01%), Postives = 99/137 (72.26%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED 485
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+ +      T ++D
Sbjct:   48 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDD 184
[Close]
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BTF3_HUMAN (Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.437e-34
Identity = 74/137 (54.01%), Postives = 99/137 (72.26%), Query Frame = 3 
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED 485
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+ +      T ++D
Sbjct:   50 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDD 186
The following BLAST results are available for this feature:
BLAST of CX288613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
BT3L4_XENTR5.835e-3654.74Transcription factor BTF3 homolog 4 OS=Xenopus tro... [more]
BT3L4_XENLA5.835e-3654.74Transcription factor BTF3 homolog 4 OS=Xenopus lae... [more]
BT3L4_DANRE7.621e-3660.98Transcription factor BTF3 homolog 4 OS=Danio rerio... [more]
BT3L4_BOVIN7.621e-3656.82Transcription factor BTF3 homolog 4 OS=Bos taurus ... [more]
BT3L4_PONAB2.896e-3556.06Transcription factor BTF3 homolog 4 OS=Pongo abeli... [more]
BT3L4_MOUSE2.896e-3556.06Transcription factor BTF3 homolog 4 OS=Mus musculu... [more]
BT3L4_HUMAN2.896e-3556.06Transcription factor BTF3 homolog 4 OS=Homo sapien... [more]
BT3L4_CHICK3.782e-3559.35Transcription factor BTF3 homolog 4 OS=Gallus gall... [more]
BTF3_MOUSE1.437e-3454.01Transcription factor BTF3 OS=Mus musculus GN=Btf3 ... [more]
BTF3_HUMAN1.437e-3454.01Transcription factor BTF3 OS=Homo sapiens GN=BTF3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002D06SK IF1 Citrus clementina cDNA clone C02002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288613 ID=CX288613; Name=CX288613; organism=Citrus clementina; type=EST; length=485bp
GAAGAACAAAAACTAAAGGGCTCTTATCTTCTTCTTCACCAAATTCTTTG
TCCCCACACAAAAACCCTAGCTCCAAGATGAATGTTGAGAAGCTAATGAA
GATGGCCGGTGCAGTTCGCACCGGTGGTAAGGGTAGTGTGAGAAGAAAGA
AGAAGGCTGTTCATAAGACAACAACCACCGATGACAAGAGGCTTCAGAGC
ACCTTGAAGAGAATAGGAGTGAATGCTATTCCTGCAATTGAGGAAGTTAA
CATTTTCAAGGATGACGTCGTTATTCAGTTCTTAAATCCCAAAGTACAAG
CTTCAATTGCTGCCAACACATGGGTAGTTAGTGGTGCCCCACAAACCAAG
AAGTTGCAGGATATTCTCCCTGGAATTATCAATCAATTGGGGCCAGATAA
TTTGGACAACCTGAGGAAGTTGGCGGAGCAGTTTCAGAAGCAAGCACCTA
ATGCAGGAACTGGTGCACCCACGACTCAAGAGGAC
back to top