CX288614

Overview
NameCX288614
Unique NameCX288614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length474
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig359 contig Ccv1_Contig359:63..536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288614 vs. ExPASy Swiss-Prot
Match: UMP2_ARATH (Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana GN=At2g27730 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.625e-25
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   16 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKE-QVQD 357
            MA+R A+R  SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP  +   +AS    A A   SA+  S  KVS D+ RNYAV+AG++  V ++GWYLK+  KK+ +VQ+
Sbjct:    1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAAGSASEAKVAGA-TASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113          
The following BLAST results are available for this feature:
BLAST of CX288614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP2_ARATH2.625e-2556.52Uncharacterized protein At2g27730, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC02002D07SK IF1 Citrus clementina cDNA clone C02002D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288614 ID=CX288614; Name=CX288614; organism=Citrus clementina; type=EST; length=474bp
TTTATGACCACCATCATGGCTTCAAGGATTGCTGTAAGAAATTTTTCTCG
AAGGTTCTCAAGCAGTGGCAAAGTACTGAGTGAGGAGGAAAAAGCAGCTG
AGAATGTTTACATCAAAAAAGTTGAGCAAGAGAAATTGGAGAAGATGGCA
CGCAAGGGACCCAAGCCGGAAGAGACACCTGCTGCTAGCTCAGGGTCAGG
AGCTGAAGCCAAACCTACCTCAGCCGCGGGAGCTTCAACTGAGAAAGTAT
CAACTGACCAGTACCGTAACTATGCAGTCATAGCTGGTATCATAACTGGT
GTTAGTGCTCTCGGATGGTATCTCAAATCAAGCAGGAAGAAAGAACAAGT
CCAGGACTGAAGTCAATATGCTAGATATAGATAATGAGGGCCATGGACGA
CATTCTATCTACGACAACTGCTCACTACTGAGTTCATACATTGCTTGGAA
ATAAACAGAACTTGGATTATTATT
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