CX288622

Overview
NameCX288622
Unique NameCX288622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length272
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.355e-44
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3
Query:    3 DTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272
            +++P LRKAIIYGYGPFR WMSIAHWL+WHFDL KFRP+EV RVKISLACVFAF+AIGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFT
Sbjct:  226 ESTPLLRKAIIYGYGPFRCWMSIAHWLMWHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFT 315          
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.360e-43
Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 3
Query:    3 DTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272
            D+SP LRKAII+GYGP RPW+SIAHW+ WHF+L KFRP+EV RVKISLACVFAFMA+GWPLI+ K G+ GW+K+WLMPWLGYHFWMSTFT
Sbjct:  227 DSSPVLRKAIIFGYGPIRPWLSIAHWVNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFT 316          
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.074e-41
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = 3
Query:    3 DTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272
            ++SP +RKAII+GYGP RPW+SIAHW+ WHF+L KFR +EV RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLGYHFWMSTFT
Sbjct:  232 ESSPVMRKAIIFGYGPIRPWLSIAHWVNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFT 321          
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.605e-37
Identity = 68/90 (75.56%), Postives = 75/90 (83.33%), Query Frame = 3
Query:    3 DTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272
            ++SP LRKA+IY YGP R WMSIAHWL  HF+L  FR +EVKR  ISLA VFAFM IGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFT
Sbjct:  232 ESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFT 321          
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 3
Query:   45 GPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272
            GPF    SI HW + HF LS F   +  +VK+S+A VF F AI +P +++ TG+ G++K+WLMPWL YHFWMSTFT
Sbjct:  166 GPFWWTGSIFHWSLMHFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFT 241          
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.256e-14
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 3
Query:   54 RPWM--SIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272
            R W   SI HW   HFD +KF   + ++VK S   V    AI +P ++L  G+ G++K+W++PWL +HFWMSTFT
Sbjct:  166 RAWWIGSILHWASIHFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFT 240          
The following BLAST results are available for this feature:
BLAST of CX288622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FAD6C_SOYBN1.355e-4484.44Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_BRANA4.360e-4378.89Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH1.074e-4176.67Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SPIOL1.605e-3775.56Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
DESA_SYNY31.155e-1953.95Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL3.256e-1445.33Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
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Properties
Property NameValue
Genbank descriptionC02002E05SK IF1 Citrus clementina cDNA clone C02002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288622 ID=CX288622; Name=CX288622; organism=Citrus clementina; type=EST; length=272bp
TTGACACATCTCCCTTCTTGCGCAAAGCAATAATATATGGATATGGCCCT
TTTCGACCTTGGATGTCAATAGCTCACTGGTTGATCTGGCACTTTGATTT
GAGCAAGTTCAGGCCAAATGAAGTTAAAAGGGTGAAGATAAGTTTGGCAT
GTGTTTTTGCATTTATGGCAATTGGATGGCCTCTAATTATGTTGAAGACA
GGAATTGCGGGATGGATAAAGTACTGGTTGATGCCATGGTTGGGCTATCA
CTTCTGGATGAGTACTTTCACT
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