CX288622
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.355e-44 Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 Query: 3 DTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272 +++P LRKAIIYGYGPFR WMSIAHWL+WHFDL KFRP+EV RVKISLACVFAF+AIGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFT Sbjct: 226 ESTPLLRKAIIYGYGPFRCWMSIAHWLMWHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFT 315
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 4.360e-43 Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 3 Query: 3 DTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272 D+SP LRKAII+GYGP RPW+SIAHW+ WHF+L KFRP+EV RVKISLACVFAFMA+GWPLI+ K G+ GW+K+WLMPWLGYHFWMSTFT Sbjct: 227 DSSPVLRKAIIFGYGPIRPWLSIAHWVNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFT 316
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 1.074e-41 Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = 3 Query: 3 DTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272 ++SP +RKAII+GYGP RPW+SIAHW+ WHF+L KFR +EV RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLGYHFWMSTFT Sbjct: 232 ESSPVMRKAIIFGYGPIRPWLSIAHWVNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFT 321
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.605e-37 Identity = 68/90 (75.56%), Postives = 75/90 (83.33%), Query Frame = 3 Query: 3 DTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272 ++SP LRKA+IY YGP R WMSIAHWL HF+L FR +EVKR ISLA VFAFM IGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFT Sbjct: 232 ESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFT 321
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19 Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 3 Query: 45 GPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272 GPF SI HW + HF LS F + +VK+S+A VF F AI +P +++ TG+ G++K+WLMPWL YHFWMSTFT Sbjct: 166 GPFWWTGSIFHWSLMHFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFT 241
BLAST of CX288622 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.256e-14 Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 3 Query: 54 RPWM--SIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFT 272 R W SI HW HFD +KF + ++VK S V AI +P ++L G+ G++K+W++PWL +HFWMSTFT Sbjct: 166 RAWWIGSILHWASIHFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFT 240 The following BLAST results are available for this feature:
BLAST of CX288622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288622 ID=CX288622; Name=CX288622; organism=Citrus clementina; type=EST; length=272bpback to top |