CX288623

Overview
NameCX288623
Unique NameCX288623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KASC1_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 6.310e-60
Identity = 110/186 (59.14%), Postives = 139/186 (74.73%), Query Frame = 2
Query:    5 DVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            D +N +DK K GVL+G+G+GG+ VF + ++ L    +++++PF +P+A TNMGSA+LA+DLG MGPNYSISTACATSN+C   AANHI RGEA++M+ GG+ AA+IPIGLGGFVACRALSQRN+DP  ASRPWD  RDGFVM             HA KRGA I AE+ GG+   DA+HMT+P  D
Sbjct:  151 DKLNTIDKRKAGVLVGTGMGGLTVFSEGVQNLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNYCFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDGFVMGEGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRAD 336          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KASC1_HORVU (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.030e-58
Identity = 108/186 (58.06%), Postives = 136/186 (73.12%), Query Frame = 2
Query:    5 DVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            D   +LD  + GVL+G+G+GG+ VF D ++ L    Y+K++PF +P+A TNMGSA+LA+D+G+MGPNYSISTACATSN+C   AANHI RGEA++++ GG+ AA+IPIGLGGFVACRALSQRN+DP  A RPWD  RDGFVM             HA KR A I AE+ GG+   DAYHMT+P  D
Sbjct:  140 DAHVKLDVGRAGVLVGTGMGGLSVFSDGVQNLIEKGYRKISPFFIPYAITNMGSALLAIDVGFMGPNYSISTACATSNYCFYAAANHIRRGEADIIVAGGTEAAIIPIGLGGFVACRALSQRNDDPITACRPWDKERDGFVMGEGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRAD 325          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_COXBU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii GN=fabF PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.980e-38
Identity = 85/184 (46.20%), Postives = 109/184 (59.24%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +NE +  + GV IGSG+GGM       +AL  S  +K++PF +P A  NM S M+++     GPN SI TAC T    I +AA  I   +A+ M+ GG+  A  P+G+GGF A RALS RN++P KASRPWD  RDGFV+             HAKKR A IYAE  G   + DAYHMT P P+
Sbjct:   93 INETNAPRVGVAIGSGIGGMPWIEKNYDALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARMIAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAACVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPE 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_VIBCH (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae GN=fabF PE=3 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 9.803e-37
Identity = 83/184 (45.11%), Postives = 112/184 (60.87%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +NE + ++ GV IGSG+GG+++     +AL     +K++PF VP    NM +  L++  G  GPN +ISTAC T    I +AA  I  G+A+ M+ GG+  A  P+G+ GF A +ALS RN++P KASRPWD +RDGFV+             HAK RGAKIYAE  G   + DAYHMT P  D
Sbjct:   93 VNEENAARIGVAIGSGIGGLELIETGHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGIMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSED 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_SYNY3 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=fabF PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-36
Identity = 82/185 (44.32%), Postives = 107/185 (57.84%), Query Frame = 2
Query:    8 VMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            V+NEL+  + GVLIG+G+GG+KV  D    L      + +PF +P    NM S + A++LG  GPN    TACA  +  I +A   +  G A  M+CGG+ AA+ P+   GF + RALS RN+DP  ASRP+D +RDGFVM              A  RGAKIY E  G + T DAYH+T P PD
Sbjct:   95 VINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPD 279          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_VIBHA (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.849e-35
Identity = 82/184 (44.57%), Postives = 107/184 (58.15%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            + E + ++ GV IGSG+GG+ +      AL     +K++PF VP    NM +  L++  G  GPN +ISTAC T    I +AA  I  G+A  M+ GG+  A  P+G+ GF A +ALS RN++P KASRPWD  RDGFV+             HAK RGAKIYAE  G   + DAYHMT P  D
Sbjct:   93 ITEENAARVGVAIGSGIGGLDLIEAGHSALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKGRDGFVLGDGAGVMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSED 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_SHIFL (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shigella flexneri GN=fabF PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.565e-34
Identity = 80/181 (44.20%), Postives = 109/181 (60.22%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            + E + ++ G  IGSG+GG+ +  +   +L     +K++PF VP    NM +  L +  G  GP+ SI+TAC +    I +AA  I  G+A++M+ GG+  A  P+G+GGF A RALS RN++P  ASRPWD  RDGFV+             HAKKRGAKIYAE  G   +SDAYHMT P
Sbjct:   93 ITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 273          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_ECOLI (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli (strain K12) GN=fabF PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.565e-34
Identity = 80/181 (44.20%), Postives = 109/181 (60.22%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            + E + ++ G  IGSG+GG+ +  +   +L     +K++PF VP    NM +  L +  G  GP+ SI+TAC +    I +AA  I  G+A++M+ GG+  A  P+G+GGF A RALS RN++P  ASRPWD  RDGFV+             HAKKRGAKIYAE  G   +SDAYHMT P
Sbjct:   93 ITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 273          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_ECOL6 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O6 GN=fabF PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.565e-34
Identity = 80/181 (44.20%), Postives = 109/181 (60.22%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            + E + ++ G  IGSG+GG+ +  +   +L     +K++PF VP    NM +  L +  G  GP+ SI+TAC +    I +AA  I  G+A++M+ GG+  A  P+G+GGF A RALS RN++P  ASRPWD  RDGFV+             HAKKRGAKIYAE  G   +SDAYHMT P
Sbjct:   93 ITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 273          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_ECO57 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O157:H7 GN=fabF PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.565e-34
Identity = 80/181 (44.20%), Postives = 109/181 (60.22%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            + E + ++ G  IGSG+GG+ +  +   +L     +K++PF VP    NM +  L +  G  GP+ SI+TAC +    I +AA  I  G+A++M+ GG+  A  P+G+GGF A RALS RN++P  ASRPWD  RDGFV+             HAKKRGAKIYAE  G   +SDAYHMT P
Sbjct:   93 ITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 273          
The following BLAST results are available for this feature:
BLAST of CX288623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
KASC1_ARATH6.310e-6059.143-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
KASC1_HORVU2.030e-5858.063-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
FABF_COXBU3.980e-3846.203-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Cox... [more]
FABF_VIBCH9.803e-3745.113-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_SYNY38.299e-3644.323-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Syn... [more]
FABF_VIBHA1.849e-3544.573-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_SHIFL1.565e-3444.203-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shi... [more]
FABF_ECOLI1.565e-3444.203-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECOL61.565e-3444.203-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECO571.565e-3444.203-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002E06SK IF1 Citrus clementina cDNA clone C02002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288623 ID=CX288623; Name=CX288623; organism=Citrus clementina; type=EST; length=560bp
AGAAGATGTCATGAATGAGTTAGATAAATCTAAATGTGGAGTTTTGATTG
GCTCCGGATTGGGTGGCATGAAGGTTTTTTATGATGCAATTGAGGCTTTA
AGGATCTCCTACAAGAAGATGAATCCTTTTTGCGTACCTTTTGCTACTAC
AAATATGGGTTCTGCTATGCTTGCAATGGATCTGGGATGGATGGGCCCAA
ACTATTCAATATCTACTGCTTGTGCTACAAGTAACTTCTGTATACTGAAT
GCGGCAAACCATATTATTAGAGGCGAAGCTAATTTGATGCTTTGCGGTGG
CTCAAATGCTGCTGTTATACCCATTGGGTTGGGAGGTTTTGTGGCATGCA
GAGCACTTTCACAGAGGAACAACGATCCTACCAAAGCTTCTCGCCCTTGG
GATATTAATCGTGATGGATTTGTCATGGGGGAAGGAGCTGGCGTTCTGCT
TTTAGAAGAATTAGAGCATGCTAAGAAAAGAGGTGCAAAAATCTATGCAG
AATTTCGTGGTGGAAGCTTCACCTCTGATGCTTATCATATGACTGAACCA
CACCCTGATG
back to top