CX288629

Overview
NameCX288629
Unique NameCX288629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length244
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:226..469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.318e-25
Identity = 58/81 (71.60%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 EGKGDGSGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 243
            +G+  G G             AMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPTSDTYI FGEAKIEDLSSQLQTQ
Sbjct:   51 QGEQGGEGKSKQSRSEKKCRKAMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQ 131          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.547e-24
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   10 GDGSGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 243
            G+  G             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQLQ+Q
Sbjct:   47 GEAGGRSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQ 124          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.639e-24
Identity = 56/78 (71.79%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   10 GDGSGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 243
            G+  G             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQ+Q+Q
Sbjct:   51 GEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQ 128          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.448e-22
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 243
            AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++FGEAKIEDLSSQLQTQ
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQ 138          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.387e-22
Identity = 47/60 (78.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 243
            AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP S+TY++FGEAKI+D+SSQLQ Q
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQ 133          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.085e-21
Identity = 44/60 (73.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 243
            A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP ++TY++FGEAK++DLSSQLQTQ
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQ 130          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQ 135          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q
Sbjct:   77 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQ 134          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_PONAB (Nascent polypeptide-associated complex subunit alpha OS=Pongo abelii GN=NACA PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQ 136          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQ 136          
The following BLAST results are available for this feature:
BLAST of CX288629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NACA_PINTA5.318e-2571.60Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH1.547e-2473.08Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH2.639e-2471.79Nascent polypeptide-associated complex subunit alp... [more]
NACA2_ARATH1.448e-2281.67Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH9.387e-2278.33Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH6.085e-2173.33Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENTR5.695e-1975.86Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA5.695e-1975.86Nascent polypeptide-associated complex subunit alp... [more]
NACA_PONAB5.695e-1975.86Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI5.695e-1975.86Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02002F01SK IF1 Citrus clementina cDNA clone C02002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288629 ID=CX288629; Name=CX288629; organism=Citrus clementina; type=EST; length=244bp
GAAGGGAAAGGAGATGGAAGTGGTCGCTCAAAACAGAGCAGGAGTGAAAA
GAAGAGTCGGAAAGCAATGTTGAAACTTGGAATGAAGCCAATCCCTGGTG
TCAGTCGAGTTACAGTTAAAAAGAGCAAAAATATTTTGTTTGTTATCTCC
AAACCAGATGTTTTCAAGAGTCCTACATCTGACACATACATTGTCTTTGG
GGAAGCAAAGATCGAGGATCTGAGTTCACAACTGCAAACTCAGG
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