CX288636

Overview
NameCX288636
Unique NameCX288636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8299 contig Ccv1_Contig8299:270..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288636 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 2.069e-43
Identity = 89/168 (52.98%), Postives = 119/168 (70.83%), Query Frame = 1
Query:   22 VVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLRNRGP-GRVWDL 522
            +VL        SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP   G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AAG+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSL   GP  RVWD+
Sbjct:   60 IVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSL--GGPVCRVWDV 223          
BLAST of CX288636 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.721e-19
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   19 YVVLXXXXXXXNSGIRNAVLLSHFDF--ASNSLSDQPVAE--LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLRNRGPGRVW 516
            +V++        S + +  LL+ F F   + SLS  P+A   L+     P  +++HP GD  +C+  +  C+LFE            G+ I  K L  L+N G Q  + F  +G+  A G  +G LR+ +WP+L +IL+E +AH S++D+ FS D +FL +    G  R+W
Sbjct:   27 WVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGAT------GITILAKELLPLQNAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIW 191          
The following BLAST results are available for this feature:
BLAST of CX288636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STLP2_ARATH2.069e-4352.98SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST... [more]
PHF1_ARATH2.721e-1932.16SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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Properties
Property NameValue
Genbank descriptionC02002F08SK IF1 Citrus clementina cDNA clone C02002F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288636 ID=CX288636; Name=CX288636; organism=Citrus clementina; type=EST; length=523bp
GATATTCGCCGCAACTACTACGTCGTTTTGGCCGGCGGTGGTGGTGCGGG
CAACAGCGGCATCCGCAACGCCGTCCTTTTGTCTCACTTCGATTTCGCCT
CCAATTCCCTCTCCGATCAGCCGGTGGCTGAGCTTCGAACTGATTCTGAT
TTGCCTTATCGAATGGCTATTCACCCGCACGGTGATGGCATTATTTGTGC
ATTGCAAAATAGCTGCAGATTGTTTGAGTGGGATGAAGTGGAGAACACTG
AAATCCGTAGACTGGGTGTGAAAATTTCAGAGAAAGTGCTCAGCCAGTTA
GAAAATGTTGGACAACAGTTAGCACTAACATTCGACTCTGAGGGTACTAT
ATTTGCTGCTGGTAGTGAGAATGGCAATTTAAGGGTTTTCAAGTGGCCTA
GCCTGGAAATCATTCTGAATGAGTCTGAAGCCCATGCTTCTGTGAAGGAT
TTGTCTTTCAGCCCTGATGGAAAATTCCTTGTCTCCTTGCGAAATCGTGG
TCCTGGTAGGGTTTGGGATCTAG
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