CX288637

Overview
NameCX288637
Unique NameCX288637
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15537 contig Ccv1_Contig15537:38..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288637 vs. ExPASy Swiss-Prot
Match: WSD1_ARATH (O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.402e-15
Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 1
Query:   58 EPVSPIGQYFNSSTLSISILAVLELEV---PFDDSLAIPLLKDIFLPINPRFSSIMVV--EKNGVKHWKSVEVKLKNHVYVPNFPVGMSQQFYDKCLQDYLSKLSAEQMPXSQPLWEVHIVKYPTSNAAXSVIFKLHHALGDGFSLMGALLSC 501
            EP+SP+    +S    I I    +       F D +   L+        PRFSS M +  +K G   W  V++++ +H+ VP+      Q   D+ ++DY S ++   M  S+PLWE H++   TS A    I K+HH++GDG SLM  LL+C
Sbjct:   17 EPLSPMSHMLSSPNFFIVITFGFKTRCNRSAFVDGINNTLINA------PRFSSKMEINYKKKGEPVWIPVKLRVDDHIIVPDLEYSNIQN-PDQFVEDYTSNIANIPMDMSKPLWEFHLLNMKTSKAESLAIVKIHHSIGDGMSLMSLLLAC 162          
The following BLAST results are available for this feature:
BLAST of CX288637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WSD1_ARATH6.402e-1533.33O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC02002F09SK IF1 Citrus clementina cDNA clone C02002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288637 ID=CX288637; Name=CX288637; organism=Citrus clementina; type=EST; length=508bp
TCAGGATCTAACACAAAACTGGAAATGGAGTGTGAGAAAGCTGATGAAGT
GGTAGCAGAGCCTGTGAGCCCAATTGGGCAATATTTCAATAGCTCTACTC
TATCAATCTCCATTCTTGCTGTTTTGGAATTAGAAGTGCCCTTTGATGAT
TCGCTGGCTATTCCGTTGCTAAAGGATATTTTCCTTCCCATCAACCCTCG
CTTCTCCTCCATCATGGTTGTGGAAAAAAATGGAGTGAAACATTGGAAAA
GCGTTGAAGTGAAGCTCAAAAACCACGTCTATGTTCCAAATTTTCCCGTT
GGCATGTCACAACAATTCTACGACAAGTGCCTGCAAGATTACTTATCAAA
ATTATCCGCGGAACAAATGCCTCANAGCCAACCATTGTGGGAAGTTCACA
TAGTAAAATATCCAACGAGCAATGCAGCANGTAGTGTGATATTCAAGCTT
CATCATGCACTTGGCGACGGCTTCTCATTGATGGGAGCTCTTCTTTCATG
TCTTCAAA
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