CX288640

Overview
NameCX288640
Unique NameCX288640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15267 contig Ccv1_Contig15267:223..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288640 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 87/208 (41.83%), Postives = 123/208 (59.13%), Query Frame = 1
Query:    1 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRXDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 624
            D+  T + +  I+++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL   DY+R QI+S+KI+ + F  + ++                       +LK  YY LMI+   H   YL I
Sbjct:   59 DMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-----------------------KLKLKYYNLMIQLDQHEGSYLSI 243          
BLAST of CX288640 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.024e-39
Identity = 86/208 (41.35%), Postives = 123/208 (59.13%), Query Frame = 1
Query:    1 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRXDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 624
            D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL   DY+R QI+S+KI+ + F  + ++                       +LK  YY LMI+   H   YL I
Sbjct:   59 DMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-----------------------KLKLKYYNLMIQLDQHEGSYLSI 243          
BLAST of CX288640 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.024e-39
Identity = 86/208 (41.35%), Postives = 123/208 (59.13%), Query Frame = 1
Query:    1 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRXDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 624
            D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL   DY+R QI+S+KI+ + F  + ++                       +LK  YY LMI+   H   YL I
Sbjct:   59 DMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-----------------------KLKLKYYNLMIQLDQHEGSYLSI 243          
BLAST of CX288640 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.238e-38
Identity = 82/208 (39.42%), Postives = 127/208 (61.06%), Query Frame = 1
Query:    1 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRXDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 624
            D   T K   EI++LC+EA     +NE++V LSK+RGQL+            Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M K EKI F ++Q+R+C++  D++RAQ++  K++ +    D ++                       +LK  Y++ MIRY+SH+ +Y+EI
Sbjct:   60 DSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQ-----------------------DLKIDYFKQMIRYFSHSANYIEI 244          
BLAST of CX288640 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 3.817e-38
Identity = 86/208 (41.35%), Postives = 121/208 (58.17%), Query Frame = 1
Query:    1 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRXDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 624
            D+  T + +  ++++C+EAK+W   NE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL   DY+R QI+S+KI+ + F  + + E  K K                      YY LMI+   H   YL I
Sbjct:   59 DMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTK-FSQEENTENMKLK----------------------YYNLMIQLDQHEGSYLSI 243          
BLAST of CX288640 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 82/210 (39.05%), Postives = 119/210 (56.67%), Query Frame = 1
Query:    1 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRXDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 624
            D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK            Y+  +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + DY +A +LSRKI  + F        K PK                  LK  YY L+++   H  +YLE+
Sbjct:   51 DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF--------KNPK---------------YESLKLEYYNLLVKISLHKREYLEV 237          
BLAST of CX288640 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.718e-30
Identity = 82/208 (39.42%), Postives = 116/208 (55.77%), Query Frame = 1
Query:    1 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRXDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 624
            D +   K +  I  L F A D++ LNEQ+V+L KK GQLK            Y+    DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I  A +++    VET+G+    EK+AFIL+QVRL L R DY  A   ++KI+ + F+ +                    D+ S   LK  YYE  IR   H++ YL++
Sbjct:   47 DTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKE--------------------DVQS---LKLKYYEQKIRIGLHDDAYLDV 231          
The following BLAST results are available for this feature:
BLAST of CX288640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_BOVIN1.550e-3941.8326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_PONAB2.024e-3941.3526S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN2.024e-3941.3526S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI2.238e-3839.4226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE3.817e-3841.3526S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_YEAST3.130e-3239.0526S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
RPN5_SCHPO1.718e-3039.4226S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionC02002F12SK IF1 Citrus clementina cDNA clone C02002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288640 ID=CX288640; Name=CX288640; organism=Citrus clementina; type=EST; length=624bp
GACGTGGCCGGCACCAAGAAGGCGGTGACGGAAATTTTGCAGCTTTGCTT
TGAAGCTAAAGACTGGAAGACTCTCAATGAACAGATTGTTAATCTTTCCA
AGAAACGCGGTCAACTCAAGCAGGCTGTAACTGCAATGGTCCAGCAAGCA
ATGCAGTACATCGATCAGACGCCAGATCTTGATACTCGTATAGAGCTCAT
CAAAACACTAAATAGTGTCTCTGCAGGGAAGATATATGTTGAAATTGAGA
GGGCAAGGTTGATTAAAAAACTTGCAAAGATTAAGGAAGAACAAGGGCTT
ATAGCGGAAGCTGCAGATCTGATGCAAGAAGTGGCTGTGGAGACATTTGG
TGCTATGGCAAAAACTGAGAAAATCGCCTTCATTCTTGAACAAGTCCGTC
TGTGCCTAGACCGCCNAGATTATGTCCGTGCACAAATTCTTTCAAGGAAG
ATTAGTCCAAGAGTTTTTGATGCTGATCCTTCGAAAGAAAAGAAAAAGCC
AAAAGAAGGTGACAATGTTGTTGAAGAGGCTCCTGCTGATATACCATCAT
TATTGGAATTGAAAAGAATCTATTATGAACTAATGATTAGGTATTACTCA
CACAACAATGATTACCTTGAAATT
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