CX288642

Overview
NameCX288642
Unique NameCX288642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288642_ssr16 microsatellite CX288642_ssr16:16..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15104 contig Ccv1_Contig15104:25..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMP1A_ARATH (Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 8.470e-66
Identity = 113/154 (73.38%), Postives = 134/154 (87.01%), Query Frame = 3
Query:  126 MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRET 587
            MA  SDA+   +LSC RC KPAHLQCPKC++LKLPRE A+FC+Q+CFKA+W+SHKSVH+KA+LS+ G  +NS L+S+GW YC+KKGQARTPKLPHFDWTG L+ YPIS+   VPA IE PDWA+DGTPKVEPNSDLQHVVEIKTP+QI+RMRET
Sbjct:    1 MASESDASSIATLSCARCEKPAHLQCPKCIDLKLPREQASFCTQECFKAAWSSHKSVHVKAQLSSIGD-QNSDLISQGWLYCVKKGQARTPKLPHFDWTGPLKQYPISTKRVVPAEIEKPDWAIDGTPKVEPNSDLQHVVEIKTPEQIQRMRET 153          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_CHICK (Methionine aminopeptidase 1 OS=Gallus gallus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.496e-17
Identity = 56/149 (37.58%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  144 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 581
            A ET       C   A LQCP C  LKL  +G+ FCSQ+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP++    VP+YI+ PD+A       E    L+   +IK  +P+ IE MR
Sbjct:    3 AVETRVCETAGCSSEAKLQCPTC--LKLGIQGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVSSWTL---EGDINTNPWSGYRYTGKLRPHYPLTPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKILSPEDIEGMR 140          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_XENLA (Methionine aminopeptidase 1 OS=Xenopus laevis GN=metap1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 54/149 (36.24%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  144 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKT--PDQIERMR 581
            A E+       C   A LQCP C++L +  +G+ FCSQ+CFK SW +HK +H KAK       +        W      G+  T   P + +TG LRP YP++    VP+YI+ PD+A       E    L+   +IKT  P+ IE MR
Sbjct:    3 AVESRVCETEGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DDKIKPEVSPW---TMDGEVNTDPWPGYRYTGKLRPHYPLTPMRPVPSYIQRPDYADHPLGMSESEQTLKGTSQIKTLSPEDIEGMR 140          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_DANRE (Methionine aminopeptidase 1 OS=Danio rerio GN=metap1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.050e-15
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  144 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 581
            A ET       C   A LQCP C++L +  +G+ FCSQ+CFK SW +HK +H KAK       E +         C++K +  T   P + +TG LRP YP++    VP+ I+ PD+A       E    ++   +IK    ++IE MR
Sbjct:    3 AVETRECETEGCHSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAKEDKTNDEEKN---------CVEK-EVNTDPWPGYRYTGKLRPYYPLTPMRLVPSNIQRPDYADHPLGMSESEQTMKGTSQIKILNAEEIEGMR 139          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_XENTR (Methionine aminopeptidase 1 OS=Xenopus tropicalis GN=metap1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.339e-15
Identity = 53/149 (35.57%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  144 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 581
            A E+       C   A LQCP C++L +  +G+ FCSQ+CFK SW SHK +H KAK       +     +  W      G   T   P + +TG LRP YP++    VP+YI+ PD+A       E    L+   +IK  + + IE MR
Sbjct:    3 AVESRVCETEGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWASHKLLHKKAK------DDKIKPETSPW---TMDGDINTDPWPGYRYTGKLRPHYPLTPMRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKILSTEDIEGMR 140          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_PONAB (Methionine aminopeptidase 1 OS=Pongo abelii GN=METAP1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15
Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = 3
Query:  144 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 581
            A ET       C   A LQCP C++L +  +G+ FCSQ+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR
Sbjct:    3 AVETRVCETDGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVSSWTV---EGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 140          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_HUMAN (Methionine aminopeptidase 1 OS=Homo sapiens GN=METAP1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15
Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = 3
Query:  144 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 581
            A ET       C   A LQCP C++L +  +G+ FCSQ+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR
Sbjct:    3 AVETRVCETDGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVSSWTV---EGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 140          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_DICDI (Methionine aminopeptidase 1 OS=Dictyostelium discoideum GN=metap1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15
Identity = 51/137 (37.23%), Postives = 70/137 (51.09%), Query Frame = 3
Query:  177 CGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVE-IKTPDQIERMRE 584
            CGKPA LQCP C+ LKL    + FCSQ+CFK  W  HK  H K        G+  +L S+                 ++ +TG LRP  I+     P  IELPD+A+   P  E  +D +++   I TP++IE MR+
Sbjct:   11 CGKPAKLQCPTCVNLKL-ETPSHFCSQECFKTFWPLHKMYHQK--------GQPENLPSQ---------------FRNYKFTGPLRPTNITPMRKAPEGIELPDYAIGSIPISERVADRKNMANIIHTPEEIEIMRQ 123          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_BOVIN (Methionine aminopeptidase 1 OS=Bos taurus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15
Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = 3
Query:  144 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 581
            A ET       C   A LQCP C++L +  +G+ FCSQ+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR
Sbjct:    3 AVETRVCETDGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVSSWTV---EGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 140          
BLAST of CX288642 vs. ExPASy Swiss-Prot
Match: AMPM1_MOUSE (Methionine aminopeptidase 1 OS=Mus musculus GN=Metap1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.888e-15
Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = 3
Query:  144 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCSQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSXLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 581
            A ET       C   A LQCP C++L +  +G+ FCSQ+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR
Sbjct:    3 AVETRVCETDGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVCSWTV---EGDVNTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 140          
The following BLAST results are available for this feature:
BLAST of CX288642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AMP1A_ARATH8.470e-6673.38Methionine aminopeptidase 1A OS=Arabidopsis thalia... [more]
AMPM1_CHICK9.496e-1737.58Methionine aminopeptidase 1 OS=Gallus gallus GN=ME... [more]
AMPM1_XENLA1.620e-1636.24Methionine aminopeptidase 1 OS=Xenopus laevis GN=m... [more]
AMPM1_DANRE1.050e-1534.90Methionine aminopeptidase 1 OS=Danio rerio GN=meta... [more]
AMPM1_XENTR2.339e-1535.57Methionine aminopeptidase 1 OS=Xenopus tropicalis ... [more]
AMPM1_PONAB3.990e-1535.57Methionine aminopeptidase 1 OS=Pongo abelii GN=MET... [more]
AMPM1_HUMAN3.990e-1535.57Methionine aminopeptidase 1 OS=Homo sapiens GN=MET... [more]
AMPM1_DICDI3.990e-1537.23Methionine aminopeptidase 1 OS=Dictyostelium disco... [more]
AMPM1_BOVIN3.990e-1535.57Methionine aminopeptidase 1 OS=Bos taurus GN=METAP... [more]
AMPM1_MOUSE8.888e-1535.57Methionine aminopeptidase 1 OS=Mus musculus GN=Met... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02002G02SK IF1 Citrus clementina cDNA clone C02002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288642 ID=CX288642; Name=CX288642; organism=Citrus clementina; type=EST; length=587bp
TTCGGCAGAGGCCCGTCTCTCTCTCTTTCCATCGACTCCTCTTTAGAATA
AAAGTATCTAGTTCTGAAAAAAAAAAAAGAAGGAATAAAAGTATCCAGAA
AGGGAAAGGGAGAGTTCACGATTCGATGGCCGGTGGATCAGATGCTGCGG
AGACTACGAGCTTATCGTGTGTTCGATGTGGCAAGCCAGCTCATCTTCAG
TGCCCAAAATGCATGGAGCTAAAGCTTCCGCGTGAAGGCGCTGCTTTCTG
TTCTCAGGACTGCTTTAAAGCTTCTTGGACCTCTCACAAATCTGTTCATT
TGAAGGCAAAGCTGTCTGCGCCAGGAACTGGAGAAAATTCATCTTTGGTT
AGTGAAGGTTGGCGTTATTGTATCAAGAAAGGACAGGCTCGAACTCCAAA
ACTTCCCCATTTTGACTGGACTGGAACACTGAGGCCATACCCCATATCTA
GCANGCTTACTGTACCTGCTTACATTGAACTACCTGATTGGGCATTGGAT
GGAACACCCAAAGTTGAGCCCAATAGTGATCTGCAGCATGTTGTTGAGAT
CAAAACTCCAGATCAAATTGAGAGAATGCGAGAAACA
back to top