CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K1_ARATH (Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.302e-39
Identity = 79/123 (64.23%), Postives = 98/123 (79.67%), Query Frame = 3
Query:   15 VKSCRGTAFWMAPEVINNKNK-GYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLAT----NSGSASPYLGR 368
            +KSC+GT FWMAPEVIN K+  GYG PADIWSLGCTVLEM T QIPY+ +E + ALF+IGRG+ P +PD+LS DA+ FI +C++VNP +RPTAA+LL+HPFV+R L +     SGSASP L R
Sbjct:  486 IKSCKGTPFWMAPEVINRKDSDGYGSPADIWSLGCTVLEMCTGQIPYSDLEPVQALFRIGRGTLPEVPDTLSLDARLFILKCLKVNPEERPTAAELLNHPFVRRPLPSVGSGGSGSASPLLRR 608          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.249e-31
Identity = 69/110 (62.73%), Postives = 80/110 (72.73%), Query Frame = 3
Query:   42 WMAPEVINNKNK--GYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR-LLATNSGSASPYL 362
            WMAPEVI N     GYG PADIWSLGCTVLEMLT QIPY+ +E   AL+ IG G  P IPD LS DA+DFI  C++VNP +RPTAA+LL+HPFV   L ++ SGS S  L
Sbjct: 1784 WMAPEVILNPKDYDGYGTPADIWSLGCTVLEMLTGQIPYSDLEIGTALYNIGTGKLPKIPDILSLDARDFILTCLKVNPEERPTAAELLNHPFVNMPLPSSGSGSVSSLL 1893          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: YSK4_HUMAN (SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.834e-25
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   15 VKSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIG--RGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            +KS  GT +WMAPEVIN    GYG  +DIWS+GCTV EM T + P A M+ MAA+F IG  RG  PP+PD  S++A DF++ C+  + ++RP+A QLL H F++R
Sbjct: 1224 LKSMHGTPYWMAPEVINES--GYGRKSDIWSIGCTVFEMATGKPPLASMDRMAAMFYIGAHRGLMPPLPDHFSENAADFVRMCLTRDQHERPSALQLLKHSFLER 1326          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: ANP1_ARATH (Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 3
Query:    9 TRVKSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPM-ECMAALFKIGRG-SPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYLG 365
            T  KS +GT +WMAPEVI     G+   ADIWS+GCTV+EM+T + P++   + +AA+F IG   S PPIPD+LS DA+DF+ +C+Q  PN RPTA++LL HPFV   +  +  SAS  LG
Sbjct:  229 TGAKSMKGTPYWMAPEVI--LQTGHSFSADIWSVGCTVIEMVTGKAPWSQQYKEVAAIFFIGTTKSHPPIPDTLSSDAKDFLLKCLQEVPNLRPTASELLKHPFV---MGKHKESASTDLG 344          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K2_ARATH (Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.276e-23
Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 3
Query:   18 KSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPM-ECMAALFKIGRG-SPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            KS +GT +WMAPEVI     G+   ADIWS+GCTV+EM+T + P++   + +AA+F IG   S PPIPD++S DA DF+ +C+Q  PN RPTA++LL HPFV
Sbjct:  231 KSMKGTPYWMAPEVI--LQTGHSFSADIWSVGCTVIEMVTGKAPWSQQYKEIAAIFHIGTTKSHPPIPDNISSDANDFLLKCLQQEPNLRPTASELLKHPFV 330          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: BCK1_YEAST (Serine/threonine-protein kinase BCK1/SLK1/SSP31 OS=Saccharomyces cerevisiae GN=BCK1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.406e-22
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   27 RGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRG-SPPPIPDS----LSKDAQDFIKQCVQVNPNDRPTAAQLLDHPF 314
            RGT FWMAPE+++ K +GY    DIWSLGC VLEM   + P++ +E +AA+FKIG+  S PPIP+     +S+  ++F+  C ++NP  RPTA +LL HPF
Sbjct: 1340 RGTVFWMAPEMVDTK-QGYSAKVDIWSLGCIVLEMFAGKRPWSNLEVVAAMFKIGKSKSAPPIPEDTLPLISQIGRNFLDACFEINPEKRPTANELLSHPF 1439          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: MKH1_SCHPO (MAP kinase kinase kinase mkh1 OS=Schizosaccharomyces pombe GN=mkh1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.359e-22
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   21 SCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIG-RGSPPPIPDSL----SKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            S +G+ FWMAPEVI+N ++GY    D+WSLGC VLEML  + P++  E + A+FK+G     PPIP  L    S +A  F+  C  VN + RPTA +LL+HPF+K
Sbjct:  991 SMQGSIFWMAPEVIHNDHQGYSAKVDVWSLGCVVLEMLAGRRPWSTDEAIQAMFKLGTEKKAPPIPSELVSQVSPEAIQFLNACFTVNADVRPTAEELLNHPFMK 1095          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K4_HUMAN (Mitogen-activated protein kinase kinase kinase 4 OS=Homo sapiens GN=MAP3K4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   15 VKSCRGTAFWMAPEVINN-KNKGYGLPADIWSLGCTVLEMLTSQIPYAPMEC-MAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            V S  GTA +MAPEVI   K +G+G  ADIWSLGC V+EM+T + P+   E     ++K+G G  PPIP+ LS + +DF+  C++ +P  R TA+QLLDH FVK
Sbjct: 1498 VNSTLGTAAYMAPEVITRAKGEGHGRAADIWSLGCVVIEMVTGKRPWHEYEHNFQIMYKVGMGHKPPIPERLSPEGKDFLSHCLESDPKMRWTASQLLDHSFVK 1601          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: Y9877_DICDI (Serine/threonine-protein kinase DDB_G0283821 OS=Dictyostelium discoideum GN=DDB_G0283821 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.320e-20
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            GT FWMAPEVI           DIWSLGCT+LEMLT   PY  +  M A+F +     PPIP+++S D + F+  C   + N RPTA+QLL+HP++K+
Sbjct:  170 GTPFWMAPEVIQMDMNARSTACDIWSLGCTLLEMLTGNPPYWDLGTMPAMFAMVNNPHPPIPNNISADLKHFLLACFVRDINKRPTASQLLEHPWIKQ 267          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K4_MOUSE (Mitogen-activated protein kinase kinase kinase 4 OS=Mus musculus GN=Map3k4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.320e-20
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   15 VKSCRGTAFWMAPEVINN-KNKGYGLPADIWSLGCTVLEMLTSQIPYAPMEC-MAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            V S  GTA +MAPEVI   K +G+G  ADIWSLGC V+EM+T + P+   E     ++K+G G  PPIP+ LS + + F+  C++ +P  R TA+QLLDH FVK
Sbjct: 1488 VNSTLGTAAYMAPEVITRAKGEGHGRAADIWSLGCVVIEMVTGKRPWHEYEHNFQIMYKVGMGHKPPIPERLSPEGKAFLSHCLESDPKIRWTASQLLDHAFVK 1591          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
M3K1_ARATH6.302e-3964.23Mitogen-activated protein kinase kinase kinase 1 O... [more]
WRK19_ARATH8.249e-3162.73Probable WRKY transcription factor 19 OS=Arabidops... [more]
YSK4_HUMAN8.834e-2552.38SPS1/STE20-related protein kinase YSK4 OS=Homo sap... [more]
ANP1_ARATH3.357e-2451.24Mitogen-activated protein kinase kinase kinase ANP... [more]
M3K2_ARATH1.276e-2353.92Mitogen-activated protein kinase kinase kinase 2 O... [more]
BCK1_YEAST2.406e-2249.50Serine/threonine-protein kinase BCK1/SLK1/SSP31 OS... [more]
MKH1_SCHPO5.359e-2248.57MAP kinase kinase kinase mkh1 OS=Schizosaccharomyc... [more]
M3K4_HUMAN1.559e-2150.00Mitogen-activated protein kinase kinase kinase 4 O... [more]
Y9877_DICDI1.320e-2047.96Serine/threonine-protein kinase DDB_G0283821 OS=Di... [more]
M3K4_MOUSE1.320e-2049.04Mitogen-activated protein kinase kinase kinase 4 O... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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