CX288650

Overview
NameCX288650
Unique NameCX288650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288650 vs. ExPASy Swiss-Prot
Match: FCF1_YEAST (rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae GN=FCF1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.543e-30
Identity = 63/104 (60.58%), Postives = 81/104 (77.88%), Query Frame = 3
Query:  225 ITKRAIKNYKEDVLNPNKKDL-TKE--KMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 527
            + KR +   K+  L  N++++ TKE  ++ RN+P VSSALFF +N A+ PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELEKLG KYR+
Sbjct:   12 LVKRTLNTKKDQRLKKNQENIKTKEDPELTRNIPQVSSALFFQYNQAIKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRI 115          
BLAST of CX288650 vs. ExPASy Swiss-Prot
Match: FCF1_PONAB (rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.568e-29
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 3
Query:  252 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 527
            ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRV
Sbjct:   26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRV 119          
BLAST of CX288650 vs. ExPASy Swiss-Prot
Match: FCF1_HUMAN (rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.568e-29
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 3
Query:  252 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 527
            ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRV
Sbjct:   26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRV 119          
BLAST of CX288650 vs. ExPASy Swiss-Prot
Match: FCF1_BOVIN (rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.568e-29
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 3
Query:  252 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 527
            ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRV
Sbjct:   26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRV 119          
BLAST of CX288650 vs. ExPASy Swiss-Prot
Match: FCF1_MOUSE (rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.493e-28
Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = 3
Query:  252 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 527
            ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQK+RV
Sbjct:   26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRV 119          
BLAST of CX288650 vs. ExPASy Swiss-Prot
Match: FCF1_SCHPO (rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe GN=fcf1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.803e-25
Identity = 59/107 (55.14%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  231 KRAIKNYKEDVLNPNKKDLTKEK--------MPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 527
            KR I N K+  L   KKD  KEK        + R +P ++S LFF  N +LGPPY V++DTNFINF +Q K+DL +G+M CLYAK  PCI+DCVMAELEKLG +YR+
Sbjct:   14 KRVI-NLKDQRLQ--KKDQKKEKEKTTKNGELVREIPQMASNLFFQFNESLGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRI 117          
BLAST of CX288650 vs. ExPASy Swiss-Prot
Match: FCF1_DICDI (rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.260e-21
Identity = 46/100 (46.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  228 TKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 527
            T     N ++ +    ++D  ++K+     + +S +FF++N AL PPY V++DTNFINFSI +KLD+   +MDCLYAKC P I+DCV AE+E+LG K++V
Sbjct:   20 TNPNFSNRQKQIQRSKQEDEHRKKLEEIPEDNTSHMFFSYNEALVPPYHVIIDTNFINFSISHKLDIIHSLMDCLYAKCIPYISDCVAAEIERLGSKFKV 119          
The following BLAST results are available for this feature:
BLAST of CX288650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FCF1_YEAST4.543e-3060.58rRNA-processing protein FCF1 OS=Saccharomyces cere... [more]
FCF1_PONAB8.568e-2965.96rRNA-processing protein FCF1 homolog OS=Pongo abel... [more]
FCF1_HUMAN8.568e-2965.96rRNA-processing protein FCF1 homolog OS=Homo sapie... [more]
FCF1_BOVIN8.568e-2965.96rRNA-processing protein FCF1 homolog OS=Bos taurus... [more]
FCF1_MOUSE2.493e-2864.89rRNA-processing protein FCF1 homolog OS=Mus muscul... [more]
FCF1_SCHPO9.803e-2555.14rRNA-processing protein fcf1 OS=Schizosaccharomyce... [more]
FCF1_DICDI2.260e-2146.00rRNA-processing protein FCF1 homolog OS=Dictyostel... [more]
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Properties
Property NameValue
Genbank descriptionC02002G10SK IF1 Citrus clementina cDNA clone C02002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288650 ID=CX288650; Name=CX288650; organism=Citrus clementina; type=EST; length=527bp
AGATTCTAAAACGGCCCGTCGCCGACTCTGAGACTCTCTTCTACTTGTTC
AACCTCAACCTAGTAATCTTACAATTAGATTTTTACGATTTTTGGAGAAG
CAGGGAAGCCGGTTTCTGGTGAGATAACTGAAAGTCTTGCTCTTAGTGAT
AAATTTGTAAGCTTTCAATCAAAGAGATGGGGAAAGCCAAAAAGGCTCCT
AAATTTGCCGCCATGAAGAAGATCATCACCAAAAGAGCTATAAAAAATTA
CAAAGAGGATGTTTTGAATCCCAACAAGAAAGACCTTACTAAGGAAAAGA
TGCCAAGAAATGTGCCTAATGTTTCTTCGGCACTTTTCTTCACACACAAC
ACTGCCTTGGGACCGCCTTACCGGGTCTTGGTGGATACCAACTTTATTAA
TTTCTCCATCCAGAATAAATTGGATTTGGAGAAGGGAATGATGGACTGCT
TATATGCGAAATGCACTCCTTGTATTACGGATTGTGTGATGGCAGAGCTT
GAGAAGCTAGGTCAGAAGTACCGAGTA
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