CX288657

Overview
NameCX288657
Unique NameCX288657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1802 contig Ccv1_Contig1802:134..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288657 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.506e-18
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 IDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 252
            + L DA+D K+ LEPEG F FSAT+G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KV
Sbjct:   20 VQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKV 103
[Close]
BLAST of CX288657 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.506e-18
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 IDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 252
            + L DA+D K+ LEPEG F FSAT+G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KV
Sbjct:   20 VQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKV 103
[Close]
BLAST of CX288657 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 252
            + LPDA+D+ +K EP+G F FSA  G     +E  ++LY K+ + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KV
Sbjct:   20 VALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI-MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKV 101
The following BLAST results are available for this feature:
BLAST of CX288657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y8359_ORYSJ2.506e-1853.57Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI2.506e-1853.57Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH3.170e-1344.05Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC02002H06SK IF1 Citrus clementina cDNA clone C02002H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288657 ID=CX288657; Name=CX288657; organism=Citrus clementina; type=EST; length=543bp
ATTGACCTGCCTGATGCTCAAGATGTGAAGCTTAAATTGGAGCCTGAAGG
AAAATTTTTCTTCTCTGCTACCAGTGGACCAGATAAGATACCCTATGAAG
TTGACATTGATTTGTACGACAAGGTTGATGTCAATGAGAGCAAAGCTAGT
GTTGGCTTGAGAAATATCCATTACCTTGTGAAAAAGGCAGAAAACAAATG
GTGGAGCAGGCTGCTAAAGCAGGCGGGAAAACCTCCTGTATTTCTGAAAG
TTGATTGGGATAAGTGGATTGATGAGGATGAGGAAGGGAAGGATGATAAA
CCTCCAGCTGATATGGACTTCGGGGATCTTGACTTCTCTAAAATGAACAT
GGGAGGTCTTGATGCTGAAGCTGCCGGCGGTGATGAAAATGATGAGAGTG
ACACAGAAAAGGAGAATGAGGTGGGAACAACACCAGCAGGGAACAGGGAA
GCACCACCACCATCTACTTCCAGTGAGCCTGATACCAAGACAGCTTGAAG
CTTTCACTTGGATATGTTTTGAACTCTTAAGGTAGCAACACTT
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