CX288663

Overview
NameCX288663
Unique NameCX288663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14166 contig Ccv1_Contig14166:1007..1341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.291e-57
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVASNSKDDPAKGA+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KF+EILTKIDRRSGKE+EKEPKFLKNGDAG VKM PTKPMVVETFSEYPPLGRFAVRDM
Sbjct:  307 DLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 6.910e-57
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRG+VASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KFAEILTKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDM
Sbjct:  307 DLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 6.910e-57
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVASNSKDDPAKGA++FT+QVIIMNHPGQIGNGYAPVLDCHTSHIA KFAEILTKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDM
Sbjct:  307 DLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.179e-56
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVASNSKDDPAK A+NFT+QVII+NHPGQIGNGYAPVLDCHTSHIA KFAE++TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM
Sbjct:  307 DLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.626e-56
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRG VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFS YPPLGRFAVRDM
Sbjct:  307 DLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 4.479e-56
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVASNSKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KFAE++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDM
Sbjct:  307 DLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.978e-56
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDM
Sbjct:  307 DLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.978e-56
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQIGNGYAPVLDCHTSHIA KFAEI TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETF  YPPLGRFAVRDM
Sbjct:  307 DLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.978e-56
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KFAE+LTKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETF+EYPPLGRFAVR M
Sbjct:  307 DLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVM 417
[Close]
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 6.467e-55
Identity = 101/111 (90.99%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVAS SKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KFAE++TKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETFS+YPPLGRFAVRDM
Sbjct:  307 DLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDM 417
The following BLAST results are available for this feature:
BLAST of CX288663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
EF1A_ARATH5.291e-5794.59Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC6.910e-5794.59Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC6.910e-5794.59Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_SOYBN1.179e-5693.69Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_MANES2.626e-5695.50Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_ORYSJ4.479e-5693.69Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_VICFA9.978e-5691.89Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A2_DAUCA9.978e-5693.69Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A1_DAUCA9.978e-5692.79Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_MAIZE6.467e-5590.99Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC02003A02SK IF1 Citrus clementina cDNA clone C02003A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288663 ID=CX288663; Name=CX288663; organism=Citrus clementina; type=EST; length=335bp
GATCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAA
GGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCC
AGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATA
GCTNTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAA
GGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTG
TTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATAT
CCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCG
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