CX288668

Overview
NameCX288668
Unique NameCX288668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288668 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.576e-14
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 3 
Query:    3 CFSMGSFEYVMDENSLLQVTIRXXXXXXXXXXXXXXXXXGHRLAMSEC--DCESRREFNGFDTIKGIGSSFGSNISAGKGNDIGRSKTDSFSISKIWLQGKKEKH---------NLPEDPSRRAFSFRFPVNRN 371
            CFSMGS+EY+MDE + L+V +                  GHR AMSEC  D   R +F+G  +++ +  +   N+           + +SFS+SKIWL+GKKEKH         +L    S RAFSFR    RN
Sbjct:  300 CFSMGSYEYIMDEETTLKVHVSTKKQSSKNRGLP-----GHRTAMSECGFDPTGRLKFSGSGSMRIVEEAAEKNVV----------ERESFSVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRAFSFRLSNQRN 418
The following BLAST results are available for this feature:
BLAST of CX288668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATL4K_ARATH9.576e-1437.31RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC02003A07SK IF1 Citrus clementina cDNA clone C02003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288668 ID=CX288668; Name=CX288668; organism=Citrus clementina; type=EST; length=405bp
GATGTTTCTCTATGGGGTCTTTTGAGTATGTAATGGATGAAAATTCTTTG
TTGCAAGTAACAATTAGAACACCAGTGAAGAAACAGTCCAGCAAGAAGCC
CTCTTTGCCATTGACTCCTGGTCACAGGCTAGCAATGTCTGAATGTGATT
GTGAATCAAGAAGAGAATTCAATGGCTTTGACACAATTAAAGGTATTGGA
AGTAGTTTTGGTTCTAATATTAGTGCGGGCAAGGGCAATGATATTGGTAG
AAGCAAAACAGATAGCTTCTCCATATCAAAAATTTGGCTTCAAGGTAAGA
AGGAGAAGCATAATTTGCCGGAAGATCCATCGAGGAGAGCTTTTTCCTTC
CGATTTCCAGTCAATAGAAATGCTGCTGCGGTTGGCGATGACCGGGATTT
GAAAT
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