CX288671 | Citrus Genome Database

Overview


Name	CX288671
Unique Name	CX288671
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	333

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX288671 vs. ExPASy Swiss-Prot
Match: F135B_XENLA (Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.802e-28
Identity = 54/100 (54.00%), Postives = 82/100 (82.00%), Query Frame = 1

Query:   31 YLRYLNTYVSVSGPHLGYLYSSNSLFNSGMWLLKKLKSTVCIHQLTFTDDPDLKKTFFYKLSQQKTLENFRHIILLSSPQDGYVPYHSARIELCQAASWD 330
            YL  L+T++S+SGPHLG LYS+++L N+G+WL++KLK +  + QLTF D+ DL+K F Y+LSQ+  L+ F++++L++SPQD YVP+HSARIE+C+ A+ D
Sbjct: 1206 YLNKLHTFLSLSGPHLGTLYSNSTLVNTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKPGLQYFKNVVLVASPQDRYVPFHSARIEMCKNATKD 1305

[Close]

BLAST of CX288671 vs. ExPASy Swiss-Prot
Match: F135B_MOUSE (Protein FAM135B OS=Mus musculus GN=FAM135B PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 9.732e-27
Identity = 52/100 (52.00%), Postives = 81/100 (81.00%), Query Frame = 1

Query:   31 YLRYLNTYVSVSGPHLGYLYSSNSLFNSGMWLLKKLKSTVCIHQLTFTDDPDLKKTFFYKLSQQKTLENFRHIILLSSPQDGYVPYHSARIELCQAASWD 330
            YL  L+T++S+SGPHLG LY++++L ++G+WL++KLK +  + QLTF D+ DL+K F Y+LSQ+  L+ F++++L++SPQD YVP+HSARIE+C+ A  D
Sbjct: 1233 YLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKD 1332

[Close]

BLAST of CX288671 vs. ExPASy Swiss-Prot
Match: F135B_HUMAN (Protein FAM135B OS=Homo sapiens GN=FAM135B PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.732e-27
Identity = 52/100 (52.00%), Postives = 81/100 (81.00%), Query Frame = 1

Query:   31 YLRYLNTYVSVSGPHLGYLYSSNSLFNSGMWLLKKLKSTVCIHQLTFTDDPDLKKTFFYKLSQQKTLENFRHIILLSSPQDGYVPYHSARIELCQAASWD 330
            YL  L+T++S+SGPHLG LY++++L ++G+WL++KLK +  + QLTF D+ DL+K F Y+LSQ+  L+ F++++L++SPQD YVP+HSARIE+C+ A  D
Sbjct: 1236 YLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKD 1335

[Close]

BLAST of CX288671 vs. ExPASy Swiss-Prot
Match: F135A_PONAB (Protein FAM135A OS=Pongo abelii GN=FAM135A PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query:   31 YLRYLNTYVSVSGPHLGYLYSSNSLFNSGMWLLKKLKSTVCIHQLTFTDDPDLKKTFFYKLSQQKTLENFRHIILLSSPQDGYVPYHSARIELCQAASWD 330
            YL  L+T++S+SGPHLG LY+S++L N+G+W ++K K +  + QLT  D  D ++TF YKLS++  L  F++++L+ S QD YVPYHSARIE+C+ A  D
Sbjct:  925 YLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSKKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKD 1024

[Close]

BLAST of CX288671 vs. ExPASy Swiss-Prot
Match: F135A_HUMAN (Protein FAM135A OS=Homo sapiens GN=FAM135A PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.315e-23
Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query:   31 YLRYLNTYVSVSGPHLGYLYSSNSLFNSGMWLLKKLKSTVCIHQLTFTDDPDLKKTFFYKLSQQKTLENFRHIILLSSPQDGYVPYHSARIELCQAASWD 330
            YL  L+T++S+SGPHLG LY+S++L N+G+W ++K K +  + QLT  D  D ++TF YKLS +  L  F++++L+ S QD YVPYHSARIE+C+ A  D
Sbjct: 1345 YLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKD 1444

[Close]

BLAST of CX288671 vs. ExPASy Swiss-Prot
Match: F135A_MOUSE (Protein FAM135A OS=Mus musculus GN=Fam135a PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query:   31 YLRYLNTYVSVSGPHLGYLYSSNSLFNSGMWLLKKLKSTVCIHQLTFTDDPDLKKTFFYKLSQQKTLENFRHIILLSSPQDGYVPYHSARIELCQAASWD 330
            YL  L+T++S+SGPHLG LY+S++L N+G+W ++K K +  + QLT  D  D ++TF YKLS +  L  F++++L+ S QD YVPYHSARIE+C+ A  D
Sbjct: 1336 YLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKD 1435

The following BLAST results are available for this feature:

BLAST of CX288671 vs. ExPASy Swiss-Prot

BLAST of CX288671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6


Match Name	E-value	Identity	Description
F135B_XENLA	8.802e-28	54.00	Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 ...	[more]
F135B_MOUSE	9.732e-27	52.00	Protein FAM135B OS=Mus musculus GN=FAM135B PE=2 SV...	[more]
F135B_HUMAN	9.732e-27	52.00	Protein FAM135B OS=Homo sapiens GN=FAM135B PE=2 SV...	[more]
F135A_PONAB	1.007e-23	50.00	Protein FAM135A OS=Pongo abelii GN=FAM135A PE=2 SV...	[more]
F135A_HUMAN	1.315e-23	50.00	Protein FAM135A OS=Homo sapiens GN=FAM135A PE=1 SV...	[more]
F135A_MOUSE	1.718e-23	50.00	Protein FAM135A OS=Mus musculus GN=Fam135a PE=2 SV...	[more]

Properties


Property Name	Value
Genbank description	C02003A11SK IF1 Citrus clementina cDNA clone C02003A11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288671 ID=CX288671; Name=CX288671; organism=Citrus clementina; type=EST; length=333bp
GCAGCATTAGCAGAGAGTATTATGGAACCATACCTACGATACCTGAATAC
ATATGTTTCGGTATCTGGTCCACATTTGGGGTATCTTTACAGTTCAAACT
CTTTATTCAACTCTGGGATGTGGCTTCTGAAGAAGTTGAAGAGTACAGTG
TGCATTCATCAGCTCACTTTCACAGATGATCCAGATCTCAAGAAAACATT
TTTTTACAAACTTTCTCAGCAGAAGACACTGGAGAATTTTAGGCATATAA
TTCTGCTATCTTCCCCACAGGATGGTTATGTTCCTTATCATTCGGCCAGA
ATTGAACTGTGCCAGGCAGCATCTTGGGACTAC