CX288676

Overview
NameCX288676
Unique NameCX288676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3368 contig Ccv1_Contig3368:521..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288676 vs. ExPASy Swiss-Prot
Match: P2C15_ARATH (Probable protein phosphatase 2C 15 OS=Arabidopsis thaliana GN=At1g68410 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.137e-53
Identity = 107/139 (76.98%), Postives = 117/139 (84.17%), Query Frame = 2
Query:  155 MASREGRR--HHHD---LVPLAALISXEMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIYTKENLLNHVLGAIPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTT 556
            MASREG+R  H+HD   LVPLAALIS E +  KMEKP V FGQAAQSRKGEDY LIKTD  RVP N S+ FSVFA+FDGHNG AAA+YT+ENLLNHV+ A+P GL RDEWL ALPRALV+GFVKTDKEFQSRGETSGTT
Sbjct:    1 MASREGKRRNHNHDDEKLVPLAALISRETKAAKMEKPIVRFGQAAQSRKGEDYVLIKTDSLRVPSNSSTAFSVFAVFDGHNGKAAAVYTRENLLNHVISALPSGLSRDEWLHALPRALVSGFVKTDKEFQSRGETSGTT 139          
BLAST of CX288676 vs. ExPASy Swiss-Prot
Match: P2C05_ARATH (Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.372e-51
Identity = 97/134 (72.39%), Postives = 113/134 (84.33%), Query Frame = 2
Query:  155 MASREGRRHHHDLVPLAALISXEMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIYTKENLLNHVLGAIPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTT 556
            M+  +  R  H LVPLA LI  E+R+EK+EKP V +GQAA ++KGEDYFLIKTDC+RVPG+PSS FSVF IFDGHNGN+AAIYTKE+LL +V+ AIP+G  RDEWLQALPRALVAGFVKTD EFQ +GETSGTT
Sbjct:    1 MSVSKASRTQHSLVPLATLIGRELRSEKVEKPFVKYGQAALAKKGEDYFLIKTDCERVPGDPSSAFSVFGIFDGHNGNSAAIYTKEHLLENVVSAIPQGASRDEWLQALPRALVAGFVKTDIEFQQKGETSGTT 134          
BLAST of CX288676 vs. ExPASy Swiss-Prot
Match: P2C12_ARATH (Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.433e-42
Identity = 82/124 (66.13%), Postives = 98/124 (79.03%), Query Frame = 2
Query:  185 HDLVPLAALISXEMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIYTKENLLNHVLGAIPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTT 556
            H  VPL+ L+  E  NEK++ P +  GQ  QS+KGED+ L+KT+CQRV G+  +TFSVF +FDGHNG+AAAIYTKENLLN+VL AIP  L RDEW+ ALPRALVAGFVKTDK+FQ R  TSGTT
Sbjct:    7 HHTVPLSVLLKRESANEKIDNPELIHGQHNQSKKGEDFTLVKTECQRVMGDGVTTFSVFGLFDGHNGSAAAIYTKENLLNNVLAAIPSDLNRDEWVAALPRALVAGFVKTDKDFQERARTSGTT 130          
BLAST of CX288676 vs. ExPASy Swiss-Prot
Match: P2C33_ORYSJ (Probable protein phosphatase 2C 33 OS=Oryza sativa subsp. japonica GN=Os03g0301700 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.988e-42
Identity = 77/121 (63.64%), Postives = 99/121 (81.82%), Query Frame = 2
Query:  194 VPLAALISXEMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIYTKENLLNHVLGAIPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTT 556
            +PLA LI  E+R    E+P V +G    +++GEDYFL+K DC RVPG+PSS FSVFA+FDGHNG +AA+++KE+LL HV+ A+P+G+GRD+WLQALPRALVAGFVKTD +FQ +GE SGTT
Sbjct:   15 LPLATLIGRELRGGGSERPLVRYGHFGFAKRGEDYFLVKPDCLRVPGDPSSAFSVFAVFDGHNGVSAAVFSKEHLLEHVMSAVPQGIGRDDWLQALPRALVAGFVKTDIDFQRKGEASGTT 135          
BLAST of CX288676 vs. ExPASy Swiss-Prot
Match: P2C03_ORYSJ (Probable protein phosphatase 2C 3 OS=Oryza sativa subsp. japonica GN=Os01g0513100 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.350e-38
Identity = 88/175 (50.29%), Postives = 106/175 (60.57%), Query Frame = 2
Query:  179 HHHD------------LVPLAALISXEMRNEK---------------------------MEKPNVSFGQAAQSRKGEDYFLIKTDCQR----------VPGNPSSTFSVFAIFDGHNGNAAAIYTKENLLNHVLGAIPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTT 556
            HHH             LVPLAALI  E R E+                             +P + +G AAQS+KGED+FL++TDC R          +  +P  TF+VFA+ DGHNGNAAAIYT++NLLNHVL A+PRGL R+EWL ALPRALVAGFVKTDKEFQ +G+TSGTT
Sbjct:   16 HHHQRRQHAGAAGGSGLVPLAALIKEEARAERPMGSGSRICARDEEDGGGGGGAEGGRRWRRPLLRYGCAAQSKKGEDFFLLRTDCARPSTSSSSSSSLASSPPHTFAVFAVLDGHNGNAAAIYTRDNLLNHVLSAMPRGLSREEWLHALPRALVAGFVKTDKEFQHKGQTSGTT 190          
BLAST of CX288676 vs. ExPASy Swiss-Prot
Match: P2C69_ORYSJ (Probable protein phosphatase 2C 69 OS=Oryza sativa subsp. japonica GN=Os09g0459600 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.750e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 2
Query:  194 VPLAALISXEMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDC-QRVPGNPSSTFSVFAIFDGHNGNAAAIYTKENLLNHVLGAIPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTT 556
            VPL  L+  E+ +E+ME+P+V  G+AA+SRKGED+ L+  +  +RV G+PS++FSVFA+FDGHNG+ AA+Y K+NLLN++L AIP GL RDEWL  LPRALVA FVKTDK+FQ+  ETSGTT
Sbjct:   10 VPLGVLLRREVTSERMERPDVLCGEAARSRKGEDFTLLLAEAGERVAGDPSTSFSVFALFDGHNGSGAAMYAKKNLLNNLLRAIPSGLSRDEWLAVLPRALVAAFVKTDKDFQAVAETSGTT 131          
BLAST of CX288676 vs. ExPASy Swiss-Prot
Match: P2C15_ORYSJ (Probable protein phosphatase 2C 15 OS=Oryza sativa subsp. japonica GN=Os02g0567200 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.325e-37
Identity = 73/123 (59.35%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  194 VPLAALISXEMRNEKM--EKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIYTKENLLNHVLGAIPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTT 556
            VPLA L+  E+ +EK   E+P +  G  +Q++KGEDY  +K DC+R+PG PSS+FS F +FDGHNGN AAIYTKENLL+++L AIP  L R++WL ALPRA+VA FVKTDK+FQ++  +SGTT
Sbjct:   19 VPLAVLLRREVVSEKTAAERPELQVGLFSQAKKGEDYTFLKPDCERLPGVPSSSFSAFGLFDGHNGNGAAIYTKENLLSNILTAIPADLNREDWLAALPRAMVAAFVKTDKDFQTKARSSGTT 141          
BLAST of CX288676 vs. ExPASy Swiss-Prot
Match: P2C40_ORYSJ (Probable protein phosphatase 2C 40 OS=Oryza sativa subsp. japonica GN=Os04g0449400 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.224e-31
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 2
Query:  125 AAAGDIRVVHMASREGRRHHHDLVPLAALISXEMR--------------NEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIYTKENLLNHVLGAIPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTT 556
            AAA  +  V +A   GRR     V L  L+  E                 E+  +P+V+ GQA +++KGED+ L+K  C+R+P    + FS FA+FDGHNG+ AA+Y KEN+L++V+  +P  L  DEWL ALPRALVAGFVKTDK+FQ+R  +SGTT
Sbjct:    5 AAAATVEAVGVAG--GRRRRSGSVALGDLLRREASAERASASASAGAGGRERERRPSVAAGQACRAKKGEDFALLKPACERLPAG-GAPFSAFALFDGHNGSGAAVYAKENILSNVMCCVPADLSGDEWLAALPRALVAGFVKTDKDFQTRAHSSGTT 159          
The following BLAST results are available for this feature:
BLAST of CX288676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
P2C15_ARATH1.137e-5376.98Probable protein phosphatase 2C 15 OS=Arabidopsis ... [more]
P2C05_ARATH2.372e-5172.39Probable protein phosphatase 2C 5 OS=Arabidopsis t... [more]
P2C12_ARATH3.433e-4266.13Probable protein phosphatase 2C 12 OS=Arabidopsis ... [more]
P2C33_ORYSJ9.988e-4263.64Probable protein phosphatase 2C 33 OS=Oryza sativa... [more]
P2C03_ORYSJ1.350e-3850.29Probable protein phosphatase 2C 3 OS=Oryza sativa ... [more]
P2C69_ORYSJ8.750e-3862.30Probable protein phosphatase 2C 69 OS=Oryza sativa... [more]
P2C15_ORYSJ3.325e-3759.35Probable protein phosphatase 2C 15 OS=Oryza sativa... [more]
P2C40_ORYSJ1.224e-3146.20Probable protein phosphatase 2C 40 OS=Oryza sativa... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02003B04SK IF1 Citrus clementina cDNA clone C02003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288676 ID=CX288676; Name=CX288676; organism=Citrus clementina; type=EST; length=558bp
ACGAGGGTTGAGTACAAAGAATCTGTCTTTTGATTGAGTCGGGACTGAGA
ATGGCCGCAAGTTATTGAGGGTTAAGGAATAATATGGCTTTGAATATAAA
GGTTTGGTAAATTTGAGGTCTTGGGCTGCAGCCGGAGACATTCGAGTGGT
ACACATGGCATCTAGAGAAGGGAGGCGTCATCATCATGATCTTGTGCCCC
TTGCTGCTTTGATCAGCANAGAGATGAGGAATGAGAAGATGGAGAAGCCT
AATGTTAGCTTTGGGCAGGCAGCTCAATCACGGAAAGGGGAGGATTATTT
CTTGATTAAGACAGATTGTCAAAGAGTACCAGGAAATCCTTCATCTACTT
TCTCTGTGTTTGCGATATTTGATGGGCACAATGGGAATGCTGCTGCAATT
TATACAAAGGAGAATTTGTTGAATCATGTGTTGGGTGCTATTCCCCGCGG
ACTTGGGCGGGATGAATGGCTTCAGGCTTTACCTCGAGCCTTAGTCGCTG
GATTTGTGAAGACTGACAAGGAATTTCAGAGTAGAGGAGAAACATCTGGG
ACCACAGC
back to top