CX288680

Overview
NameCX288680
Unique NameCX288680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14127 contig Ccv1_Contig14127:366..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288680 vs. ExPASy Swiss-Prot
Match: TTC38_PONAB (Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 47/155 (30.32%), Postives = 76/155 (49.03%), Query Frame = 2
Query:   89 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 541
            A E   ++L++ P D+L+LK +    FY+G  +   D + ++ P+   +     ++ GI +F L+E      AE+ AK+ L IN  D WS H + H+ +     K+ ++FM+            +  HN+WH AL YL         L IYD HI
Sbjct:  127 ACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQH-SETLWKDSDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHI 279          
BLAST of CX288680 vs. ExPASy Swiss-Prot
Match: TTC38_HUMAN (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 47/155 (30.32%), Postives = 76/155 (49.03%), Query Frame = 2
Query:   89 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 541
            A E   ++L++ P D+L+LK +    FY+G  +   D + ++ P+   +     ++ GI +F L+E      AE+ AK+ L IN  D WS H + H+ +     K+ ++FM+            +  HN+WH AL YL         L IYD HI
Sbjct:  127 ACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQH-SETFWKDSDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHI 279          
BLAST of CX288680 vs. ExPASy Swiss-Prot
Match: TTC38_MOUSE (Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 2
Query:   89 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 541
            A +   ++L++ P D+L+LK +    FY+G  +   D + +V P+   +     ++ GI +F L+E      A++ AK+ L I   D WS H + HV +     K+ ++FM++           +  HN+WH AL YL         L IYD+HI
Sbjct:  123 ACDLWEQILRDHPTDMLALKFSHDAYFYLGYQEQMRDSVARVYPFWTPDIPLNSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAHVHEMRAEIKDGLEFMQQ-SEGHWKDSDMLACHNYWHWAL-YLIEKGDYEAALTIYDSHI 275          
BLAST of CX288680 vs. ExPASy Swiss-Prot
Match: TTC38_XENLA (Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 48/155 (30.97%), Postives = 72/155 (46.45%), Query Frame = 2
Query:   89 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 541
            A +   ++L+  P DLL+LK      FY+G      D + +VLPY + E     ++ G+ +F LLE      A + AK+ L + + D WS H + HV +        + FM+E           +  H +WH AL YL         L +YDNHI
Sbjct:  126 AADLWERILQSHPTDLLALKFAHDCYFYLGEQRQMRDSVARVLPYWKPETPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVERTDSWSVHTIAHVHEMKADLDSGLSFMQE-TENNWKGSDMLACHVYWHWAL-YLIEKGDYEAALTLYDNHI 278          
BLAST of CX288680 vs. ExPASy Swiss-Prot
Match: TTC38_XENTR (Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 46/155 (29.68%), Postives = 72/155 (46.45%), Query Frame = 2
Query:   89 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 541
            A +   ++L+  P DLL+LK      FY+G      D + +VLPY         ++ G+ +F LLE      A + AK+ L +++ D WS H + HV +        + FM+E           +  H +WH AL ++E        L +YDNHI
Sbjct:  126 AADLWERILQNHPTDLLALKFAHDCYFYLGEQRQMRDSVARVLPYWKPGTPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVDQTDSWSVHTVAHVHEMRADLDSGLAFMQE-TENNWKGSDMLACHVYWHWALYFIE-KGDYEAALTLYDNHI 278          
The following BLAST results are available for this feature:
BLAST of CX288680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TTC38_PONAB9.714e-1530.32Tetratricopeptide repeat protein 38 OS=Pongo abeli... [more]
TTC38_HUMAN9.714e-1530.32Tetratricopeptide repeat protein 38 OS=Homo sapien... [more]
TTC38_MOUSE6.296e-1429.68Tetratricopeptide repeat protein 38 OS=Mus musculu... [more]
TTC38_XENLA1.403e-1330.97Tetratricopeptide repeat protein 38 OS=Xenopus lae... [more]
TTC38_XENTR5.330e-1329.68Tetratricopeptide repeat protein 38 OS=Xenopus tro... [more]
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Properties
Property NameValue
Genbank descriptionC02003B09SK IF1 Citrus clementina cDNA clone C02003B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288680 ID=CX288680; Name=CX288680; organism=Citrus clementina; type=EST; length=541bp
GTCTCGTCTGGATGAAGCTACCACATACGAGAAGGCAGTTTTCTACGCTG
TCTGTTATTTGATTTCTGATGACAGAGACGATGAAGTGGCCGTTGAGTCG
CACTCTAAGCTTCTGAAAGAGTTTCCAAGAGATCTGCTTTCTCTGAAAAG
GACCCAAATACTCTGCTTCTACATGGGCCGCCCTGATCTGTGTTTCGATA
TTATTCATCAGGTTCTGCCCTATAATCAACAAGAAGATTTCATATTTGGC
ATTCTTGCGTTTTCGTTGCTAGAGCTTGGACAGATGTCAGATGCTGAGGA
AGCTGCTAAAAAGGGACTTAAAATCAACAAACATGACTGCTGGTCTCAAC
ATGCTCTGTGCCATGTTCTCCAGCATGATTGTTGTTTTAAAGAAGCAGTA
CAGTTCATGGAAGAATGCTCGTCCACATGGAGTTCTTGTTCATCATTCAT
GTATACACACAATTGGTGGCACGTGGCGCTCTGTTACTTGGAAGGTCATT
CTCCAATGAGAAAAGTCCTGGAGATTTACGATAATCATATC
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