CX288681

Overview
NameCX288681
Unique NameCX288681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13269 contig Ccv1_Contig13269:553..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288681 vs. ExPASy Swiss-Prot
Match: CBAA1_MACFA (Calcium-binding atopy-related autoantigen 1 OS=Macaca fascicularis GN=CBARA1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   18 KVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGYL----RGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDIDNNGEISKEEFKQVMALMRSHNRQGAFHRDGLRTGLNVKGPVENGGLVEYFFGED 482
            K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y+     G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +AFKMFD++ +GE+  EEF+QV +++RS    G  HRD   TG  +K  +    L  YFFG D
Sbjct:  126 KIFRYFATLKVINEPGEAEVFMTPEDFVRSITPNEKQPE-HLGLDQYIIKRFDGKKISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMRHRDRPTTGNTLKSGL-CSALTTYFFGAD 286          
BLAST of CX288681 vs. ExPASy Swiss-Prot
Match: CBAA1_HUMAN (Calcium-binding atopy-related autoantigen 1 OS=Homo sapiens GN=CBARA1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   18 KVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGYL----RGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDIDNNGEISKEEFKQVMALMRSHNRQGAFHRDGLRTGLNVKGPVENGGLVEYFFGED 482
            K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y+     G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +AFKMFD++ +GE+  EEF+QV +++RS    G  HRD   TG  +K  +    L  YFFG D
Sbjct:  126 KIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPE-HLGLDQYIIKRFDGKKISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMRHRDRPTTGNTLKSGL-CSALTTYFFGAD 286          
BLAST of CX288681 vs. ExPASy Swiss-Prot
Match: CBAA1_MOUSE (Calcium-binding atopy-related autoantigen 1 OS=Mus musculus GN=Cbara1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.234e-22
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   18 KVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGYL----RGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDIDNNGEISKEEFKQVMALMRSHNRQGAFHRDGLRTGLNVKGPVENGGLVEYFFGED 482
            K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y+     G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +AFKMFD++ +GE+  EEF+QV +++RS    G  HRD   TG  +K  +    L  YFFG D
Sbjct:  128 KIFRYFATLKVINEPGETEVFMTPQDFVRSITPNEKQPE-HLGLDQYIIKRFDGKKIAQEREKFADEGSIFYSLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMRHRDRPTTGNTLKSGL-CSALTTYFFGAD 288          
BLAST of CX288681 vs. ExPASy Swiss-Prot
Match: CBAA1_BOVIN (Calcium-binding atopy-related autoantigen 1 OS=Bos taurus GN=CBARA1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.234e-22
Identity = 63/163 (38.65%), Postives = 89/163 (54.60%), Query Frame = 3
Query:   18 KVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGY----LRGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDIDNNGEISKEEFKQVMALMRSHNRQGAFHRDGLRTGLNVKGPVENGGLVEYFFGED 482
            K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y      G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +AFKMFD++ +GE+  EEF+QV +++RS    G  HRD   TG  +K  +    L  YFFG D
Sbjct:  128 KIFRYFATLKVISEHGESEVFMTPQDFVRSITPNEKQPE-HLGLDQYTIKRFDGKKIAQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMRHRDRSTTGNTLKSGL-CSALTTYFFGAD 288          
BLAST of CX288681 vs. ExPASy Swiss-Prot
Match: CBAA1_RAT (Calcium-binding atopy-related autoantigen 1 OS=Rattus norvegicus GN=Cbara1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   18 KVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGYL----RGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDIDNNGEISKEEFKQVMALMRSHNRQGAFHRDGLRTGLNVKGPVENGGLVEYFFGED 482
            K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y+     G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +AFKMFD++ +GE+  EEF+QV +++RS    G  HRD   TG  +K  +    L  YFFG D
Sbjct:  128 KIFRYFATLKVINEPGETEVFMTPQDFVRSITPNEKQPE-HLGLDQYIIKRFDGKKIAQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMRHRDRPTTGNTLKSGL-CSALTTYFFGAD 288          
BLAST of CX288681 vs. ExPASy Swiss-Prot
Match: CBAA1_DANRE (Calcium-binding atopy-related autoantigen 1 OS=Danio rerio GN=cbara1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 3
Query:   18 KVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSES-----HLVR--DGYLRGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDIDNNGEISKEEFKQVMALMRSHNRQGAFHRDGLRTGLNVKGPVENGGLVEYFFGED 482
            K+F YFA+L+      + E+ M P D +R+I P     E+      +V+  DG    ++   +      E  + + +   GLISF +YIF  T+LS P+ +F +AFKMFD++ +GE+  EEF+QV +++RS    G  HRD   TG  +K    +  L  YFFG D
Sbjct:  133 KIFRYFATLKIINEHGDAEVYMTPQDFVRSITPNEKQPENLGLDQFMVKRYDGKDFWQKISQDREKFADEDSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDLEEFEQVQSIIRSQTSMGMRHRDRSTTGNTLKTGGCSSALTTYFFGAD 298          
The following BLAST results are available for this feature:
BLAST of CX288681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CBAA1_MACFA1.710e-2238.65Calcium-binding atopy-related autoantigen 1 OS=Mac... [more]
CBAA1_HUMAN1.710e-2238.65Calcium-binding atopy-related autoantigen 1 OS=Hom... [more]
CBAA1_MOUSE2.234e-2238.65Calcium-binding atopy-related autoantigen 1 OS=Mus... [more]
CBAA1_BOVIN2.234e-2238.65Calcium-binding atopy-related autoantigen 1 OS=Bos... [more]
CBAA1_RAT2.918e-2238.65Calcium-binding atopy-related autoantigen 1 OS=Rat... [more]
CBAA1_DANRE1.601e-2035.54Calcium-binding atopy-related autoantigen 1 OS=Dan... [more]
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Properties
Property NameValue
Genbank descriptionC02003B10SK IF1 Citrus clementina cDNA clone C02003B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288681 ID=CX288681; Name=CX288681; organism=Citrus clementina; type=EST; length=493bp
ATTCGGCACGAGGCCTGAAGGTGTTTGAGTACTTTGCGTCTTTACGATCA
CCGGAAGGAGAATTGCTCATGAGACCAGCAGATTTGATGCGAGCCATCGT
TCCTGTATTTCCTCCCTCTGAATCACACCTTGTCAGAGATGGATATTTGA
GAGGGGAAAGGAGGCCTGGGGAGTTAAGATGTGCTCCTTCAGAATTTTTT
ATGCTCTTTGATATGAACAATGATGGATTGATATCTTTCAAAGAATATAT
CTTTTTTGTAACTCTACTCAGCATTCCGGAATCAAGCTTTTCTGTGGCCT
TCAAGATGTTTGACATTGACAACAATGGGGAGATCAGTAAGGAAGAATTT
AAGCAAGTCATGGCTTTGATGAGATCTCATAACAGACAAGGGGCTTTCCA
TAGGGATGGACTTCGGACTGGGCTAAATGTTAAGGGTCCTGTGGAAAATG
GAGGTCTGGTGGAATACTTCTTTGGTGAAGATGGAAGAGCACG
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