CX288688

Overview
NameCX288688
Unique NameCX288688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig965 contig Ccv1_Contig965:141..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 5.097e-81
Identity = 130/151 (86.09%), Postives = 142/151 (94.04%), Query Frame = 1
Query:    1 DVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            DV+TST CWTAMAALLV L+FVMGP+Q+LKLYG+PYWIFVMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREPK SGP+P +L G LI+SM +DH+VSD
Sbjct:  267 DVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPKNSGPLPLHLLGSLIKSMKQDHFVSD 417          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 8.695e-81
Identity = 129/151 (85.43%), Postives = 141/151 (93.38%), Query Frame = 1
Query:    1 DVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            D+ITST CWTAMAALLV L+F MGP+Q+LKLYG+PYWIFVMWLD VTYLHHHGHEDKLPWYRGK WSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PV+GKYYREPKKSGP+P +L G L+RSM +DHYVSD
Sbjct:  288 DIITSTACWTAMAALLVYLNFSMGPVQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYREPKKSGPLPLHLLGSLVRSMKEDHYVSD 438          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 1.136e-80
Identity = 134/151 (88.74%), Postives = 142/151 (94.04%), Query Frame = 1
Query:    1 DVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            DVITSTVCWTAM ALLVGLSFV+GP+QLLKLYG+PY   VMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHLIEATEAA+PVLGKYYREPKKS P+PF+L GDL RS+ +DHYVSD
Sbjct:  278 DVITSTVCWTAMLALLVGLSFVIGPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSAPLPFHLLGDLTRSLKRDHYVSD 428          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 5.275e-78
Identity = 130/152 (85.53%), Postives = 138/152 (90.79%), Query Frame = 1
Query:    1 DVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKS-GPIPFNLFGDLIRSMSKDHYVSD 453
            DVITST CW AM  LLVGL FVMGP+QLLKLYGVPY IFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PV GKYYREPKKS  P+PF+L G++IRS   DH+VSD
Sbjct:  282 DVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFHLIGEIIRSFKTDHFVSD 433          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 6.448e-76
Identity = 125/151 (82.78%), Postives = 137/151 (90.73%), Query Frame = 1
Query:    1 DVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            DV+TST CWTAMA LLV L+FVMGPMQ+LKLY +PYWI VMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYG  NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREP KSGP+P +L G L +S+ +DH+VSD
Sbjct:  232 DVLTSTACWTAMAVLLVCLNFVMGPMQMLKLYVIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLGILAKSIKEDHFVSD 382          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 1.437e-75
Identity = 124/151 (82.12%), Postives = 137/151 (90.73%), Query Frame = 1
Query:    1 DVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            DV+TST CWTAMAALLV L+F +GP+Q+LKLYG+PYWI VMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYG  NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREP KSGP+P +L   L +S+ +DHYVSD
Sbjct:  274 DVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLEILAKSIKEDHYVSD 424          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 9.636e-72
Identity = 120/150 (80.00%), Postives = 132/150 (88.00%), Query Frame = 1
Query:    4 VITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            V+TST+CWT MAALL+ L    G +Q+ K+YG PY IFVMWLD VTYLHHHG+E KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL EAT+AA+PVLGKYYREPKKSGPIPF+L  DL RSM +DHYVSD
Sbjct:  209 VVTSTLCWTVMAALLLYLCTAFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDIGTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVSD 358          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 9.019e-70
Identity = 111/150 (74.00%), Postives = 130/150 (86.67%), Query Frame = 1
Query:    4 VITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            +  ST+CW  M +LL+ LSF+  P+ +LKLYG+PYWIFVMWLD VTYLHHHGH  KLPWYRGKEWSYLRGGLTT+DRDYGW  NIHHDIGTHVIHHLFPQIPHYHL+EAT+AA+PVLG YYREP++S P+PF+L   LI+SM +DH+VSD
Sbjct:  212 IAISTLCWATMFSLLIYLSFITSPLLVLKLYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSYLRGGLTTVDRDYGWIYNIHHDIGTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYREPERSAPLPFHLIKYLIQSMRQDHFVSD 361          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.901e-68
Identity = 112/150 (74.67%), Postives = 129/150 (86.00%), Query Frame = 1
Query:    4 VITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            + TST CW+ M   L+ LSFV GP+ +LK+YGVPY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT+AA+ VLG+YYREPK SG IP +L   L+ S+ KDHYVSD
Sbjct:  213 IATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSD 362          
BLAST of CX288688 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 8.441e-68
Identity = 109/150 (72.67%), Postives = 134/150 (89.33%), Query Frame = 1
Query:    4 VITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSD 453
            V+TST+CW  + ++L+ LS  +GP+ +LKLYGVPY IFVMWLD VTYLHHHG+  KLPWYRG+EWSYLRGGLTT+DRDYGW NN+HHDIGTHVIHHLFPQIPHYHL+EAT++A+ VLGKYYREP+KSGP+PF+L   L++S+S+DH+VSD
Sbjct:  209 VVTSTLCWGIVLSVLLYLSLTIGPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTHKLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDIGTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYREPQKSGPLPFHLLKYLLQSISQDHFVSD 358          
The following BLAST results are available for this feature:
BLAST of CX288688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3D_ARATH5.097e-8186.09Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_RICCO8.695e-8185.43Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_SESIN1.136e-8088.74Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN5.275e-7885.53Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_BRANA6.448e-7682.78Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH1.437e-7582.12Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3E_TOBAC9.636e-7280.00Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN9.019e-7074.00Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH2.901e-6874.67Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU8.441e-6872.67Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC02003C05SK IF1 Citrus clementina cDNA clone C02003C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288688 ID=CX288688; Name=CX288688; organism=Citrus clementina; type=EST; length=454bp
GATGTGATCACTTCAACAGTATGCTGGACGGCCATGGCTGCTTTGCTAGT
GGGTTTATCATTTGTAATGGGTCCTATGCAGTTGCTTAAACTCTATGGCG
TTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGACTTACTTGCAT
CACCACGGGCATGAAGACAAACTTCCGTGGTATCGTGGAAAGGAATGGAG
TTACTTAAGGGGAGGGCTCACAACACTTGATCGTGACTATGGATGGTTCA
ATAACATCCACCACGATATTGGAACCCACGTCATACATCACCTCTTCCCT
CAGATCCCGCATTACCACTTAATAGAAGCAACTGAGGCTGCTAGACCAGT
TCTTGGAAAATATTACCGTGAGCCAAAGAAATCGGGACCGATACCTTTTA
ACCTTTTTGGAGATTTAATTAGAAGCATGAGTAAAGACCACTATGTTAGT
GACA
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