CX288690

Overview
NameCX288690
Unique NameCX288690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288690_ssr483 microsatellite CX288690_ssr483:483..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX288690 vs. ExPASy Swiss-Prot
Match: ARK1_ARATH (Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.188e-41
Identity = 80/118 (67.80%), Postives = 100/118 (84.75%), Query Frame = 3
Query:    3 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNP 356
            K LL M +SGNID+IAQVARG+ANFAKCE+R I+QG+RKGRS L+E+  LEWL +NS  +SAST+RH+ELALCHLAQNE+NA DF   G   E+V+IS+ESSR+DIR+LAKK +K+NP
Sbjct:  930 KGLLTMAQSGNIDIIAQVARGMANFAKCETREIMQGRRKGRSLLLEEGVLEWLTSNSHIDSASTQRHIELALCHLAQNEENANDFKRTGSVTEIVRISVESSRDDIRSLAKKILKTNP 1047          
BLAST of CX288690 vs. ExPASy Swiss-Prot
Match: ARK1_ORYSJ (Armadillo repeat-containing kinesin-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0152900 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 4.874e-41
Identity = 82/118 (69.49%), Postives = 96/118 (81.36%), Query Frame = 3
Query:    3 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNP 356
            KALL M R+G+ +VIAQ+ARG+ANFAKCESR I QG RKGRS L+E+  L W++ANS   SASTRRH+ELA CHLAQNEDNARD I  GG KEL++IS ESSR+D RNLAKK + SNP
Sbjct:  821 KALLGMFRTGHNEVIAQIARGMANFAKCESRVISQGHRKGRSLLIEEGVLNWMVANSSAFSASTRRHIELAFCHLAQNEDNARDIILTGGIKELLRISRESSRDDTRNLAKKALNSNP 938          
BLAST of CX288690 vs. ExPASy Swiss-Prot
Match: ARK3_ARATH (Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.373e-35
Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = 3
Query:    6 ALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNP 356
            ALL MVR G+ DV+AQVARG+ANFAKCESRA  QG ++G+S L+ED AL W++ N+KT +A+ RRH+ELALCHLAQ+E NA++ +  G   ELV+IS + SREDIR+LA +T+ S+P
Sbjct:  789 ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKRGKSLLIEDGALSWIVQNAKTETAAIRRHIELALCHLAQHEGNAKEMVKEGAMWELVRISRDCSREDIRSLAHRTLTSSP 905          
BLAST of CX288690 vs. ExPASy Swiss-Prot
Match: ARK2_ORYSJ (Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.219e-35
Identity = 72/123 (58.54%), Postives = 95/123 (77.24%), Query Frame = 3
Query:    3 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNPRLQAD 371
            KALL MV+ G+ DV+AQVARG+ANFAKCESRA  QG + G+S L++D AL W++ N+   +A  RRH+ELALCHLAQ+E N++D IS G   ELV+IS + SREDIR LA +T+ S+P LQ++
Sbjct:  761 KALLGMVKCGHPDVLAQVARGIANFAKCESRAATQGNKVGKSLLIDDGALPWIVKNANNEAAPIRRHIELALCHLAQHEVNSKDIISEGALWELVRISRDCSREDIRMLAYRTLTSSPTLQSE 883          
BLAST of CX288690 vs. ExPASy Swiss-Prot
Match: ARK2_ARATH (Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 8.903e-35
Identity = 73/123 (59.35%), Postives = 95/123 (77.24%), Query Frame = 3
Query:    3 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNPRLQAD 371
            KALL MVR G+ DV+AQVARG+ANFAKCESRA  QG + GRS L+ED AL W++ ++   +A  RRH+ELALCHLAQ+E NA++ IS G   ELV+IS E SREDIR+LA +T+ S+P  +++
Sbjct:  764 KALLGMVRCGHPDVLAQVARGIANFAKCESRATTQGVKSGRSLLIEDGALPWIVQHANDEAAPIRRHIELALCHLAQHEVNAKEMISGGALWELVRISKECSREDIRSLAHRTLSSSPVFRSE 886          
The following BLAST results are available for this feature:
BLAST of CX288690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ARK1_ARATH2.188e-4167.80Armadillo repeat-containing kinesin-like protein 1... [more]
ARK1_ORYSJ4.874e-4169.49Armadillo repeat-containing kinesin-like protein 1... [more]
ARK3_ARATH1.373e-3560.68Armadillo repeat-containing kinesin-like protein 3... [more]
ARK2_ORYSJ5.219e-3558.54Armadillo repeat-containing kinesin-like protein 2... [more]
ARK2_ARATH8.903e-3559.35Armadillo repeat-containing kinesin-like protein 2... [more]
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Properties
Property NameValue
Genbank descriptionC02003C07SK IF1 Citrus clementina cDNA clone C02003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288690 ID=CX288690; Name=CX288690; organism=Citrus clementina; type=EST; length=495bp
TTAAAGCACTTCTGGCAATGGTTAGATCTGGGAATATTGATGTCATTGCA
CAGGTTGCTAGAGGACTAGCTAACTTTGCAAAATGTGAATCCCGGGCAAT
TGTTCAAGGACAAAGAAAGGGCCGTTCACATCTNATGGAAGACAGTGCGC
TTGAATGGTTGATTGCCAACTCTAAAACCAATTCGGCTTCAACCCGGCGC
CATGTTGAACTTGCACTTTGTCATTTAGCACAAAACGAGGACAATGCGAG
GGACTTCATATCACGCGGTGGCGCGAAAGAGCTTGTACAGATATCAATCG
AGTCCAGTAGGGAAGATATCCGCAACTTAGCAAAGAAGACAATGAAGTCA
AACCCAAGATTACAAGCTGACACGCATGCCTAATTGCAAATAAATGTACA
GATTGATGCCTTCCAAAAAGTTGTCTCTGTAATATATTCAAACAAAGCAG
GTACCATCCAGTTTCGACATTGGGTTTTGTATTATATATATATAT
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