CX288691
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.633e-26 Identity = 78/165 (47.27%), Postives = 92/165 (55.76%), Query Frame = 3 Query: 18 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506 MAQ MLLM GVST++ +LKR++L+ Q Q ++PK S+L F+PL + + K KVED K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP GAIGA Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGA 157 HSP 2 Score: 71.2478 bits (173), Expect = 2.986e-12 Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 3 Query: 321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458 K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 245
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.429e-22 Identity = 72/163 (44.17%), Postives = 79/163 (48.47%), Query Frame = 3 Query: 18 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506 MAQTMLL + ++SLV + L+PKP S L + F + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGA Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGA 156 HSP 2 Score: 67.0106 bits (162), Expect = 5.631e-11 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 3 Query: 321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 246
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21 Identity = 73/165 (44.24%), Postives = 79/165 (47.88%), Query Frame = 3 Query: 18 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGA Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGA 158 HSP 2 Score: 67.0106 bits (162), Expect = 5.631e-11 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 3 Query: 321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21 Identity = 73/165 (44.24%), Postives = 79/165 (47.88%), Query Frame = 3 Query: 18 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGA Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGA 158 HSP 2 Score: 67.0106 bits (162), Expect = 5.631e-11 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 3 Query: 321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20 Identity = 53/80 (66.25%), Postives = 54/80 (67.50%), Query Frame = 3 Query: 267 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506 K KVED K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP GAIGA Sbjct: 69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGA 148 HSP 2 Score: 68.1662 bits (165), Expect = 2.528e-11 Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 3 Query: 321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458 K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 236 The following BLAST results are available for this feature:
BLAST of CX288691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288691 ID=CX288691; Name=CX288691; organism=Citrus clementina; type=EST; length=506bpback to top |