CX288691

Overview
NameCX288691
Unique NameCX288691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9449 contig Ccv1_Contig9449:74..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.633e-26
Identity = 78/165 (47.27%), Postives = 92/165 (55.76%), Query Frame = 3
Query:   18 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGA
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGA 157          

HSP 2 Score: 71.2478 bits (173), Expect = 2.986e-12
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 3
Query:  321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 245          
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.429e-22
Identity = 72/163 (44.17%), Postives = 79/163 (48.47%), Query Frame = 3
Query:   18 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506
            MAQTMLL +           ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGA
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGA 156          

HSP 2 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 246          
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21
Identity = 73/165 (44.24%), Postives = 79/165 (47.88%), Query Frame = 3
Query:   18 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGA
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGA 158          

HSP 2 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248          
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21
Identity = 73/165 (44.24%), Postives = 79/165 (47.88%), Query Frame = 3
Query:   18 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGA
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGA 158          

HSP 2 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248          
BLAST of CX288691 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 53/80 (66.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  267 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGA 506
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGA
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGA 148          

HSP 2 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 3
Query:  321 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 458
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 236          
The following BLAST results are available for this feature:
BLAST of CX288691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL3.633e-2647.27Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_TOBAC1.429e-2244.17Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLSG2.063e-2144.24Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLLC2.063e-2144.24Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH6.636e-2066.25Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC02003C09SK IF1 Citrus clementina cDNA clone C02003C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288691 ID=CX288691; Name=CX288691; organism=Citrus clementina; type=EST; length=506bp
ATATTCATTCAATATTAATGGCTCAAACTATGCTGCTCATGTCTGGGGTT
TCCACTAGCCACGCAGGAAACTTGAAAAGAGACTCTTTAGTCACATTTCA
AACGCAGATGCTGAGACCTAAGCCATTCTCTCATCTTATGTTCAACCCAC
TCTCTAATGAATCTTTAACTGCTGCTGCGGCTTCTTCATCATCTAAAGCT
TTTTCTACTGTTGCCCTCTTCAAATCTAAAACCAAAGCTCCACCCAAGAC
CAAGAAGGTTGAATCAAAGCCAAAAGTTGAGGATGGTATCTTTGGGACCT
CTGGAGGATTTGGTTTTACAAAGCAAAATGAGCTCTTTGTTGGTCGTGTT
GCCATGATTGGCTTTGCTGCTTCCTTGTTGGGTGAGGGAATAACTGGGAA
GGGGATTCTAGCTCAGTTGAATTTAGAGACCGGAATTCCAATCTATGAAG
CAGAGCCACTGCTTTTATTTTTCATCTTGTTCACCTTGCTTGGAGCAATT
GGAGCT
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